Table 3.
Over-represented known CREs in N-bicluster 9.
| Cis Regulatory Element | % Present in Whole Genome | % Present in N-bicluster 9 | P-value |
| BoxII | 49.32% | 66.67% | 6.90E-05 |
| RAV1A | 84.00% | 94.44% | 1.94E-04 |
| Wbox | 80.83% | 92.06% | 3.40E-04 |
| MYB2CONSENSUSAT | 63.96% | 78.57% | 3.43E-04 |
| RY_repeat | 5.36% | 13.49% | 4.09E-04 |
| ebox | 86.24% | 95.24% | 5.87E-04 |
| DPBF1&2_binding_site_motif | 64.32% | 77.78% | 9.66E-04 |
| ARF | 45.03% | 59.52% | 0.001096 |
| AtMYC2_BS_in_RD22 | 44.10% | 57.94% | 0.001509 |
| MYB4 | 72.72% | 84.13% | 0.001727 |
| Bellringer/replumless/pennywise BS1 IN AG | 42.04% | 55.56% | 0.001932 |
| SV40 | 25.69% | 38.10% | 0.001954 |
| ATB2/AtbZIP53/AtbZIP44/GBF5BS in ProDH | 48.52% | 61.90% | 0.002188 |
| CCA1 | 34.48% | 47.62% | 0.002400 |
| ABRE like | 26.46% | 38.10% | 0.004204 |
| AtMYB2 BS in RD22 | 16.57% | 26.19% | 0.005280 |
| T box | 58.94% | 70.63% | 0.006024 |
| LFY | 62.88% | 73.81% | 0.007078 |
Results of a promoter sequence analysis of genes from N-bicluster 9 with the Fisher Exact Test used to determine CRE frequency over-representation in N-bicluster 9. Over-representation of CREs was determined by comparing the frequency of these sites in N-bicluster 9 genes to the frequency in the whole genome as a background. Significance was determined using a 5% FDR cut-off. Indicated in this table is the percentage of genes from the whole genome and N-bicluster 9 that contain these elements and the respective p-values for over-representation. *P-values 0.01–0.05; **P-values 0.001–0.01; ***P-values < 0.001.