Table 4.
Sequence characterization of DYS449.2 alleles in various haplogroup backgrounds
| Sample | Country | Haplogroup | Allele | Sequence | Tract | Repeat* |
|---|---|---|---|---|---|---|
| Control | 29 | tggagtctctcaagcctgttcta...[TTTC]15TCT… TTTC | - | - | ||
| CTTC[TTTC]14TCTCTT...acagcaaactccacttccagg | ||||||
| 2221 | Cameroon | A-P97 | 32.2 | tggagtctctcaagcctgttcta...[TTTC]11TT[TTTC]2TCT… | 1 | 11 |
| TTTCCTTC[TTTC]19TCTCTT...acagcaaactccacttccagg | ||||||
| 2222 | Brazil | M9C | 27.2 | tggagtctctcaagcctgttcta...[TTTC]13TCT… TTTCCT | 2 | 1 |
| TC[TTTC]1TT[TTTC]13TCTCTT...acagcaaactccacttccagg | ||||||
| 2231 | Japan | NO-N214 | 30.2 | tggagtctctcaagcctgttcta...[TTTC]16TCT…TTTCCT | 2 | 11 |
| TC[TTTC]10[TTTTTC][TTTC]3TCTCTT...acagcaaact | ||||||
| ccacttccagg | ||||||
| 2230 | India | R1a-M198 | 32.2 | tggagtctctcaagcctgttcta...[TTTC]16[TCdel]†TCT… | - | - |
| TTTCCTTC[TTTC]17TCTCTT...acagcaaactccacttccagg | ||||||
| 1257 | Italy | R1b1b2-M296 | 28.2 | tggagtctctcaagcctgttcta...[TTTC]15TCT…TTTCCT | - | - |
| TC[TTTC]14TC[TCdel]TT...acagcaaactccacttccagg |
*Bold designates nucleotide content and position where mutation occurs within or immediately following the repeat indicated.
†Precise location of TC deletion is ambiguous due its presence in a poly-TC stretch.