Table 1.
Summary of sequence data of chromosome 10 regions investigated
Locus | Position, Mb | Maize |
Teosinte |
πmaize/πteosinte, % | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N | L | S | πsilent | θsilent | Tajima's D | k | N | L | S | πsilent | θsilent | Tajima's D | k | |||
1 | 83.70 | 14 | 191 | 2 | 0.0056 | 0.0032 | 1.932 | NA | 13 | 198 | 4 | 0.0062 | 0.0065 | −0.153 | NA | 89.7 |
2 | 84.50 | 27 | 497 | 4 | 0.0083 | 0.0069 | 0.550 | 0.024 | 15 | 462 | 9 | 0.0187 | 0.0201 | −0.524 | 0.023 | 44.4 |
3 | 85.00 | 21 | 377 | 2 | 0.0021 | 0.0061 | −1.514 | 0.027 | 8 | 467 | 11 | 0.0150 | 0.0138 | −0.958 | 0.028 | 14.0* |
4 | 85.30 | 26 | 413 | 1 | 0.0004** | 0.0006** | −0.714 | NA | 12 | 400 | 19 | 0.0124 | 0.0157 | −0.930 | NA | 3.2** |
5 | 85.50 | 27 | 474 | 0 | 0.0000** | 0.0000** | NA | NA | 11 | 475 | 25 | 0.0152 | 0.0180 | −0.718 | NA | 0.0** |
6 | 85.50 | 28 | 334 | 1 | 0.0006** | 0.0008* | −0.363 | NA | 12 | 336 | 15 | 0.0104 | 0.0148 | −1.268 | NA | 5.8** |
7 | 85.65 | 27 | 405 | 0 | 0.0000** | 0.0000** | NA | NA | 9 | 429 | 16 | 0.0157 | 0.0146 | 0.385 | NA | 0.0** |
8 | 85.65 | 28 | 446 | 1 | 0.0002** | 0.0006** | −1.151 | 0.052 | 11 | 465 | 12 | 0.0061 | 0.0066 | −0.758 | 0.054 | 3.3** |
9 | 85.65 | 25 | 559 | 1 | 0.0000** | 0.0000** | −1.151 | 0.041 | 10 | 683 | 26 | 0.0219 | 0.0230 | −0.283 | 0.05 | 0.0** |
10 | 85.65 | 28 | 626 | 1 | 0.0016** | 0.0009** | 1.213 | 0.026 | 12 | 627 | 11 | 0.0132 | 0.0139 | −0.212 | 0.027 | 12.1* |
11 | 85.65 | 27 | 582 | 1 | 0.0000** | 0.0000** | −0.338 | 0.009 | 12 | 552 | 5 | 0.0142 | 0.0134 | 0.227 | 0.003 | 0.0** |
12 | 85.65 | 27 | 716 | 0 | 0.0000** | 0.0000** | NA | 0.021 | 8 | 714 | 7 | 0.0086 | 0.0100 | −0.667 | 0.020 | 0.0** |
13 | 85.65 | 28 | 561 | 0 | 0.0000** | 0.0000** | NA | 0.057 | 11 | 515 | 14 | 0.0089 | 0.0093 | −0.183 | 0.057 | 0.0** |
14 | 85.65 | 27 | 787 | 1 | 0.0002** | 0.0003** | −0.728 | NA | 14 | 751 | 20 | 0.0068 | 0.0084 | −0.784 | NA | 2.9** |
15 | 85.65 | 27 | 610 | 1 | 0.0003** | 0.0004** | −0.338 | NA | 11 | 570 | 48 | 0.0290 | 0.0300 | 0.045 | NA | 1.0** |
16 | 85.65 | 26 | 466 | 3 | 0.0009** | 0.0017* | −1.090 | NA | 8 | 558 | 51 | 0.0344 | 0.0353 | 0.035 | NA | 2.6** |
17 | 85.65 | 28 | 660 | 3 | 0.0006** | 0.0012** | −1.165 | NA | 10 | 652 | 64 | 0.0338 | 0.0352 | −0.200 | NA | 1.8** |
18 | 85.65 | 26 | 501 | 3 | 0.0006** | 0.0016* | −1.513 | NA | 11 | 557 | 48 | 0.0296 | 0.0307 | −0.165 | NA | 2.0** |
19 | 85.80 | 27 | 720 | 9 | 0.0010** | 0.0036 | −2.275** | NA | 11 | 750 | 29 | 0.0142 | 0.0129 | −0.073 | NA | 7.0** |
20 | 86.10 | 26 | 421 | 3 | 0.0017** | 0.0019* | −0.216 | NA | 14 | 461 | 28 | 0.0158 | 0.0191 | −0.743 | NA | 10.8** |
21 | 86.40 | 26 | 595 | 21 | 0.0094 | 0.0161 | −1.496 | NA | 13 | 586 | 28 | 0.0233 | 0.0261 | −0.421 | NA | 40.3 |
22 | 86.70 | 27 | 487 | 12 | 0.0061 | 0.0089 | −0.846 | NA | 15 | 467 | 22 | 0.0200 | 0.0206 | −0.241 | NA | 30.5* |
23 | 87.60 | 25 | 670 | 5 | 0.0039 | 0.0023 | 1.967 | 0.025 | 11 | 666 | 12 | 0.0063 | 0.0068 | −0.411 | 0.026 | 61.9 |
Locus 1, pza00048 obtained from Wright et al. (49); 2, pzb03525; 3, pzb03526; 4, pzb03527; 5, pzb03528; 6, pzb03529; 7–18, pzb03530–pzb03532, pzb02831, pzb03533-pzb03540; 19, pzb03541; 20, pzb03542; 21, pzb03543; 22, pzb02753; 23, pzb02851. The relative physical locations of investigated regions are based on the Maize Agarose FPC Map (www.genome.arizona.edu/fpc/maize). N, number of sequence; L, the length of a given locus; S, number of segregating sites; π and θ were estimated for noncoding and synonymous sites; K, divergence between maize or teosinte and Tripsacum dactyloides. NA, not available.
*Significant at the 0.05 level.
**Significant at the 0.01 level.