Comparison of content and localization of relevant proteins within the various morphological structures formed by the P69, M12, F6 and M12-Vim prostate sublines grown embedded in lrECM gels. (A) A Z-stack of P69 acini from day 8 3D cultures was examined by immunofluorescence confocal microscopy. These 8 pictures represent plane 4, 8, 12, 16, 20, 24, 28 and 32 from 40 such planes. Acini were fixed and stained with antibody to α6-integrin (green). All pictures are taken at a magnification of 63X and nuclei were counterstained with DAPI (blue) as discussed in Materials and Methods. (B) Confocal immunofluorescence microscopy of structures formed by the various sublines at day 8 in lrECM stained with antibodies to vimentin (green) and Ki-67 (red), panels a1 to a4; β-catenin (red), panels b1 to b4; and E-cadherin (green), panels c1 to c4; keratin 5/6 (green), panels d1 to d4; keratin 8 (green), panels e1 to e4; and nuclei (blue) in all panels. (C) Cellular structures were stained with antibodies to α6-integrin (green), panels h1 to h4, or β1-integrin (red), panels j1 to j4 with overlay of α6β4 integrin in panel k4. For details of immunostaining see Materials and Methods. (D) LnCap and PC3 cell lines were grown in lrECM and stained at day 8 as described in panel C. For panels B, C and D a size marker of 5 µm is shown.