Table 2.
Sigma factor | Consensus sequence (Ref.) | Total number of hits | Genea,b | Distance from start codonc |
---|---|---|---|---|
SigA | TTGACW-N17-TATAMTd (15) | 0 | – | – |
TTGACW-N16–21-TATAMT (15,17) | 0 | – | – | |
TTGACW-N16–21-TATAMT (15,17) | 20e | Rv0068f | −84 | |
Rv0305c (PPE) | −163 | |||
Rvnr01 (16S rRNA) | −225 | |||
Rv1403c | −84 | |||
Rv2011cf | −50 | |||
Rv2487c (PE_PGRS) | −288 | |||
Rv2578cf | −35 | |||
Rv3082c (virS)f | −44 | |||
Rv3760 | −485 | |||
SigF | GTTT-N17-GGGTAT (15) | 4 | Rv1248c (sucA) | −358 |
Rv3287c (rsbW/usfX)g | −35 | |||
Rv3349c | −264 | |||
SigH | SGGAAC-N17–22-SGTTS (15) | 150 | Rv0384c (clpB)g | −72 |
Rv0474 | −150 | |||
Rv0563 (htpX) | −78 | |||
Rv0569 | −475 | |||
Rv1072 | −79 | |||
Rv1535 | −93 | |||
Rv1786 | −448 | |||
Rv1792 | −112 | |||
Rv1883c | −217 | |||
Rv2018 | −182 | |||
Rv2184c | −178 | |||
Rv2308 | −34 | |||
Rv2334 (cysK) | −364 | |||
Rv2373c (dnaJ2) | −138 | |||
Rv2466cg | −77 | |||
Rv2525c | −345 | |||
Rv2694c | −96 | |||
Rv2745c | −66 | |||
Rv2804c | −384 | |||
Rv2839c (infB) | −313 | |||
Rv3179 | −321 | |||
Rv3482c | −248 | |||
Rv3597c (lsr2) | −203 | |||
Rv3832c | −481 | |||
Rv3913 (trxB2)g | −66 |
aGene is reported only if the distance of consensus sequence is ≤500 bp upstream of the start codon and it has a non-coding upstream region of ≥25 bp.
bAccording to Cole et al. (36).
cLocation is relative to the translation start site as determined at http://genolist.pasteur.fr/TubercuList, except for Rv3287c (rsbW/usfX), where location is relative to transcription start site according to Beaucher et al. (37).
dW = A/T; M = A/C; S = G/C.
eBy allowing one mismatch in the consensus sequence.
fAlso predicted to be an E. coli σ70 promoter with one mismatch.