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. 2009 May 21;37(Web Server issue):W193–W201. doi: 10.1093/nar/gkp388

Table 3.

Hypoxia responsive motifs present upstream of genesa

Sequenceb Scorec Gened
ccGGGGAtgAAcGTCCCCgc 11.8486 Rv1039c (PPE15)e
TgCGGGACTAcAaTCCCGgg 11.7186 Rv1811 (mgtC)
ggCGGGACTATgGTCgCGAc 11.414 Rv1552 (frdA)
gTCGGGgCggTgGTCCCCgg 11.2576 Rv0345
TTGGGGcCaTccGgCCCGgA 11.195 Rv0877
aTaGtGACaTTcGaCCCGAA 10.8046 Rv3318 (sdhA)f
aTCGGGcCgAAcGTCaCGAt 10.761 Rv1824
cTCGGGACaTTAcTtCCGtt 10.7435 Rv1881c (lppE)
caCGGGACgAgcaTCCCCAg 10.7301 Rv2194 (qcrC)
cTCGGGtgTgAgGTCCCatA 10.6815 Rv2221c (glnE)
gcCaGGACgTcgGgCCCGAg 10.5356 Rv1256c (cyp130)

aIn addition to those detected by Park et al. (13).

bLower case characters show disagreement to motif consensus.

cCalculated as mentioned in Park et al. (13).

dAccording to Cole et al. (36).

eInduced in artificial granulomas (30).

fRepressed in hypoxia in M. tuberculosis H37Rv:ΔdosR (13).