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. 2009 May 12;37(Web Server issue):W287–W295. doi: 10.1093/nar/gkp330

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© 2009 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 6. — (a) Tertiary structure of a frameshifting pseudoknot (PDB ID: 1YG3, chain: A, nucleotide numbers: 3–30). Stem 1 is in yellow, stem 2 is in blue, loop 1 is in red, loop 2 is in green and the nucleotide (A13) between the two stems is in violet. (b) The superposition between the query pseudoknot (1YG3) colored orange and an identified pseudoknot (2AP5) colored green with an RMSD of 2.97 Å.