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. Author manuscript; available in PMC: 2010 Sep 1.
Published in final edited form as: J Comput Chem. 2009 Sep;30(12):1821–1838. doi: 10.1002/jcc.21183

Table 4.

Interaction energies of a sodium cation with the models compounds as a function of orientation.

Drude ab initio Difference
Energy (kcal mol−1) Energy (kcal mol−1) Energy (kcal mol−1)
Pyridine
NZ in −10.45 −12.30 1.85
NZ out −6.62 −8.24 1.62
CG −5.38 −7.12 1.74
CE1 −3.61 −5.17 1.57
Pyrimidine
N1 in −7.89 −9.51 1.62
N2 out −4.36 −5.32 0.96
C2 −4.49 −5.54 1.05
C4 −2.77 −3.61 0.84
Imidazole
NE2 in −12.97 −14.97 2.00
NE2 out −8.91 −9.75 0.84
CG −4.77 −5.75 0.98
CD2 −5.70 −6.64 0.94
ND1 −3.15 −4.02 0.87
CE1 −7.81 −8.75 0.84

See Figure S1 of the supporting information for images of the sodium-model compound orientations.