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. Author manuscript; available in PMC: 2010 Sep 1.
Published in final edited form as: J Comput Chem. 2009 Sep;30(12):1821–1838. doi: 10.1002/jcc.21183

Table 7.

Minimum interaction energies and distances for homodimers of pyridine, pyrimidine and imidazole.

Drude ab initio Difference
Energy (kcal mol−1) Distance (Å) Energy (kcal mol−1) Distance (Å) Energy (kcal mol−1) Distance (Å)
Pyridine
1 −2.63 4.94 −2.98 4.90 0.35 0.04
2 −2.35 5.89 −4.00 5.83 1.65 0.06
3 −1.52 6.25 −2.14 6.29 0.62 −0.04
Pyrimidine
1 −2.82 5.80 −3.81 5.81 0.99 −0.01
2 −3.61 5.76 −4.59 5.79 0.98 −0.03
3 −2.70 6.23 −2.94 6.23 0.24 0.00
4 −2.26 6.14 −2.41 6.26 0.15 −0.12
5 −1.51 6.20 −1.85 6.27 0.34 −0.07
Imidazole
1 −4.25 5.42 −6.30 5.17 2.05 0.25
2 −3.00 5.55 −5.01 5.24 2.00 0.31
3 −8.62 5.18 −9.75 5.33 1.14 −0.15

See Figure S3 of the supporting information for images of the model compound dimer orientations.