Table 3.

tag SNP threshold (r2)	Significant Intergenic Comparisons			Intragenic LD: mean r2
	Non-interacting	Lysin-VERL	P-value	Lysin	VERL	rtp	rib
0.64	3 of 231 (1.3%)	16 of 152 (10.5%)	0.0041	0.105	0.094	0.078	0.077
0.4	2 of 145 (1.4%)	10 of 78 (12.8%)	0.0055	0.076	0.102	0.027	0.077
0.3	2 of 138 (1.4%)	9 of 72 (12.5%)	0.0096	0.076	0.095	0.027	0.077
0.1	1 of 76 (1.3%)	5 of 33 (15.1%)	0.0230	0.048	0.085	0.005	0.009