Table 4.
Summary of output files/directories created for each ChemChains experiment.
| File/Directory Name | Description |
| allNodes_avg.mtb | Tab-delimited text file with activation levels of all nodes across all simulations |
| input_dosages.csv | Activity levels of all external inputs across all simulations |
| patternNodes_avg.csv | Activity levels of nodes specified for pattern analysis. (Created only during pattern analysis) |
| input_labels.csv | List of external input nodes |
| node_labels.csv | Names of all nodes in the network |
| specs.txt | Simulation specification file used for this experiment |
| logic/ | Directory containing all logic files associated with this experiment |
| nodesAvg/ | Directory containing activity level information for each node |
| snapshotAnalysis/ | Directory to hold node activity information obtained from multiple points in the course of a simulation |
| patterns/ | Output directory for the patterns extension |
| bits/ | Output directory holding ON/OFF sequences for all nodes in the network |