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. 2009 May 19;10:153. doi: 10.1186/1471-2105-10-153

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Copyright © 2009 Stivala et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Superposition of β-grasp query hits. (a) Superposition of the top 20 hits to the β-grasp query structure d1ubia_. This superposition is generated by simply finding the orthogonal transformation that minimizes the RMSD between the C_αatoms in the most central residues of the SSEs that are matched between the query and the hit structure. (b) Multiple alignment of the top 20 hits generated with MUSTANG [2]. Five structures are missing as they have multiple NMR models, which MUSTANG cannot currently handle. Figures were generated with PyMOL [63].