Table 1.
distance information | ||||||
without | with | |||||
Fold | SCOP sid | # SSEs | AUC | time | AUC | time |
β-grasp | d1ubia_ | 8 | 0.80 | 0 h 47 m | 0.92 | 0 h 32 m |
Key-barrel | d1tttb1 | 9 | 0.80 | 0 h 50 m | 0.97 | 0 h 50 m |
Immunoglobulin | d1ae6h1 | 13 | 0.89 | 1 h 47 m | 0.95 | 1 h 53 m |
Plait (ferredoxin) | d1bhne_ | 15 | 0.61 | 1 h 53 m | 0.85 | 2 h 18 m |
GFP-like | d1h6rb_ | 17 | 1.00 | 3 h 06 m | 0.99 | 3 h 06 m |
Jelly-roll | d2phlb1 | 19 | 0.87 | 4 h 24 m | 0.93 | 5 h 13 m |
Tim-barrel | d1tima_ | 21 | 0.99 | 4 h 31 m | 1.00 | 4 h 30 m |
NAD-binding fold | d1f6dc_ | 30 | 0.98 | 14 h 45 m | 0.99 | 16 h 33 m |
Area under ROC curve (AUC) and time taken for searches for several structural folding patterns against the ASTRAL SCOP 95% sequence identity non-redundant database consisting of 15273 domains using discrete tableaux, both with and without incorporating SSE distance information. Times (in hours and minutes) reported are elapsed times using the sparse matrix (UMFPACK) implementation on an Intel Xeon 3.2 GHz machine with 8 GB memory running Linux. The table is sorted by query size (number of SSEs in query).