Table 2.
DAWGPAWS scripts for conversion of annotation results from native program output to GFF.
| Annotation Program | Result Type | DAWGPAWS Script |
| FGENESH [50,51] | Gene ab initio | cnv_fgenesh2gff.pl |
| GeneMark.hmm [43] | Gene ab initio | cnv_genemark2gff.pl |
| Find_LTR [45] | TE ab initio | cnv_findltr2gff.pl |
| LTR_FINDER [21] | TE ab initio | cnv_ltrfinder2gff.pl |
| LTR_seq [46] | TE ab initio | cnv_ltrseq2gff.pl |
| LTR_STRUC [20] | TE ab initio | cnv_ltrstruc2gff.pl |
| RepSeek [52] | TE ab initio | cnv_repseek2gff.pl |
| NCBI-BLAST [49] | TE and gene homology | cnv_blast2gff.pl |
| RepeatMasker [22] | TE homology | cnv_repmask2gff.pl |
| TEnest [24] | TE homology | cnv_tenest2gff.pl |