Table 1.
Genes tested in computational and biochemical assays
| Gene ID | Gene | Computational marching of the Zur consensus | Position of DNA fragment used | |||
|---|---|---|---|---|---|---|
| Position § | Sequence | Score | EMSA | Footprinting | ||
| YPO3134 | ykgM | -34 to -16 | GATGTTACATTATAACATA | 15.6 | -134 to +102 | -134 to +102 |
| YPO2060 | znuC | -45 to -27 | AGCGTAATATTATAACATT | 12.5 | -185 to +52 | -142 to +52 |
| YPO2061 | znuA | -49 to -31 | AATGTTATAATATTACGCT | 12.5 | -158 to +67 | -142 to +52 |
| YPO1963 | astA | -44 to -26 | AAAGTTACGTCGTAACGTT | 8.2 | -165 to +124 | -165 to +124 |
| YPO1962 | astC | -478 to -460 | AATATTATTACATAACCGT | 4.4 | -498 to -2 | --- |
| YPO2374 | rovA | --- | --- | 0 | -493 to -87 | --- |
| YPO2367 | gst | --- | --- | 0 | --- | -571 to -217 |
§, The numbers indicated the nucleotide position upstream the start code of each gene tested.