Abstract
Drug-induced long QT syndrome (LQTS) is a prevalent disorder of uncertain etiology that predisposes to sudden death. KCNE2 encodes MinK-related peptide 1 (MiRP1), a subunit of the cardiac potassium channel IKr that has been associated previously with inherited LQTS. Here, we examine KCNE2 in 98 patients with drug-induced LQTS, identifying three individuals with sporadic mutations and a patient with sulfamethoxazole-associated LQTS who carried a single-nucleotide polymorphism (SNP) found in ≈1.6% of the general population. While mutant channels showed diminished potassium flux at baseline and wild-type drug sensitivity, channels with the SNP were normal at baseline but inhibited by sulfamethoxazole at therapeutic levels that did not affect wild-type channels. We conclude that allelic variants of MiRP1 contribute to a significant fraction of cases of drug-induced LQTS through multiple mechanisms and that common sequence variations that increase the risk of life-threatening drug reactions can be clinically silent before drug exposure.
Keywords: MiRP1, LQTS, SNP, Bactrim, sulfamethoxazole
Inherited long QT syndrome (LQTS) is an uncommon cardiac arrhythmia that predisposes to torsades de pointes (TdP), ventricular fibrillation, and sudden death (1–4). The molecular basis for LQTS is known: delayed repolarization of the myocardium prolongs the cardiac action potential increasing the QT interval measured on the surface electrocardiogram. Mutations in five ion channel genes cause the majority of cases of inherited LQTS. LQTS mutations in SCN5A increase activity of the sodium channel that depolarizes the myocardium to initiate the cardiac action potential (5); LQTS mutations in KCNE1 or KvLQT1 (encoding subunits of IKs channels) and KCNE2 or HERG (encoding subunits of IKr channels) diminish potassium fluxes that repolarize the heart to end each beat (6–9).
Acquired LQTS is a common disorder caused by drugs and metabolic abnormalities. The risk for acquired LQTS increases when factors that decrease potassium flux act concurrently to impair the ability of the myocardium to repolarize. Well-recognized conditions that diminish “repolarization reserve” include female gender, hypokalemia, and drugs that inhibit cardiac potassium channels (10). Several lines of evidence suggest that patients with drug-induced LQTS have an underlying predisposition to dysrrhythmia. The QT interval measured before drug exposure tends to be longer in patients who later develop drug-induced LQTS than in individuals who receive the same agent safely (11, 12). Moreover, sporadic mutations have been identified in patients with drug-induced TdP (9, 13, 14). Thus, we demonstrated previously that patients with “acquired” LQTS can have a genetic predisposition to arrhythmia because of mutation in the MinK-related peptide 1 (MiRP1) subunit of their IKr potassium channels (9). In that study, a woman with clarithromycin-induced TdP was found to carry a sporadic missense mutation in KCNE2; channels formed with the altered subunit (Q9E-MiRP1) were abnormal at baseline because they activated less readily (and so passed less potassium); moreover, Q9E-MiRP1 channels were 3-fold more sensitive to drug inhibition than wild type. In that case, a rare mutation increased the risk of drug-induced TdP by both decreasing repolarization reserve and increasing sensitivity to an agent that is usually well tolerated.
Here we examine KCNE2 in 98 patients with drug-induced arrhythmia and identify four missense variants, three mutations that diminish potassium flux at baseline (M54T-, I57T- and A116V-MiRP1) and a single-nucleotide polymorphism (SNP) producing T8A-MiRP1 that is present in ≈1.6% of healthy individuals (9). Our patient with the SNP had a normal electrocardiogram at rest but developed a very long QT interval on Bactrim [trimethoprim/sulfamethoxazole (TMP/SMX)] therapy. The apparent etiology: channels formed with T8A-MiRP1 are inhibited by SMX at levels present in the sera of patients on TMP/SMX.
Materials and Methods
Study Subjects.
The female/male ratio in this study population was 2:1, and 95 patients were Caucasian. Informed consent was obtained from each subject approved by the Vanderbilt University Institutional Review Board.
Mutation Analysis.
The GenBank accession number for human KCNE2 encoding MiRP1 is AF071002. Genomic DNA was isolated from peripheral blood leukocytes by standard methods and two overlapping regions of the KCNE2 coding sequence screened for the presence of nucleotide sequence polymorphism by single-strand conformational polymorphism (SSCP) analysis (15). Oligonucleotide primer pairs used to amplify the KCNE2 coding sequence were: section I (nucleotides 32–259 of accession no. AF071002), forward primer: 5′-TGT TCG CCT ATT TTA TTA TTT-3′; reverse primer: 5′-AAA GAG AAC ATT CCA ATC AT-3′; section II (corresponding to nucleotides 212-471), forward primer: 5′-TAC TAT GTC ATC CTG TAC CTC-3′; reverse primer: 5′-GTT AGC TTG GTG CCT TTC T-3′. Amplification reactions were carried out by using 200 ng genomic DNA, 0.5 μM primers, 0.2 mM deoxynucleotide triphosphates, and Taq polymerase. SSCP analysis was performed on 0.5× mutation detection electrophoresis (MDE) gels subjected to overnight electrophoresis at 4 W and stained with silver nitrate. Abnormal conformers were excised from dried gels, eluted into sterile water at room temperature, reamplified by using the original primers, and sequenced by using dye terminator chemistry. The presence of the KCNE2-A116V mutation was confirmed independently on PCR amplified genomic DNA by using an allele-specific hybridization assay with a 32P end-labeled primer: 5′-AAC ATT GGT GTG GCT GGG TT-3′.
Heterologous Expression.
Mutations identified in patients were produced in wild-type human KCNE2 in pGA1 (9) by plaque-forming unit-based mutagenesis (QuickChange Kit; Stratagene, La Jolla, CA) followed by insertion of mutant gene fragments into translationally silent restriction sites in the wild-type construct and confirmed by automated DNA sequencing. Transient transfection of Chinese hamster ovary (CHO) cells was by DEA-Dextran, Chloroquine, and DMSO shock with KCNE2 and HERG (Human ether a-go-go related gene) in pCl-neo-based vectors (Invitrogen) as before (9).
Electrophysiology.
Data were recorded by using an Axopatch 200 B amplifier (Axon Instruments, Foster City, CA), a Quadra 800 Macintosh computer and pulse software (Heka Electronics, Lombrecht/Pfalz, Germany). Sampled at 1 kHz, data are presented as mean ± SEM. All experiments were performed at room temperature. Holding voltage was −80 mV. Standard voltage protocol: 1-s prepulse from −60 to 20 mV in 10-mV step followed by 2-s step to −40 mV with a 1-s interpulse interval. Simulated cardiac action potential protocol: voltage ramp from 40 to −80 mV with a rate of change of −71 mV per second. Data are presented after ohmic leak subtraction (standard protocol) or subtraction of residual current after full drug block (simulated action potential). If leak was greater than 25% of total current, cells were discarded. The bath solution was (in mM): 100 NaCl/4 KCl/1 CaCl2/0.7 MgCl2/10 Hepes, pH 7.5 with NaOH. The pipette solution was (in mM): 100 KCl/10 Hepes/1 MgCl2/2 EGTA, pH 7.5 with KOH. Stock solutions of oxatomide (Jensen, Spring House, PA), quinidine (Sigma), and procainamide (Sigma) were prepared by dissolution in bath solution at concentrations of 0.01, 1, and 10 mM, respectively. Oxatomide solution was prepared fresh daily. Sulfamethoxazole and trimethoprim (Sigma) are poorly soluble in water and were dissolved in ethanol at 100 mM or methanol at 20 mM, respectively. Solutions were then prepared daily by diluting stocks in bath solution. Sulfamethoxazole and trimethoprim were mixed 1:5 by weight as in TMP/SMX; control solutions for these studies were supplemented with equal levels of ethanol and/or methanol.
Results and Discussion
To examine the basis for drug-induced LQTS, genomic DNA samples were obtained from 98 patients who experienced excessive prolongation of the QT interval (>600 msec) or who developed TdP during drug treatment (see Materials and Methods). As KCNE2 consists of a single coding exon (encoding a peptide of just 123 amino acids), it was amplified readily in two overlapping segments from genomic DNA, allowing the coding region to be screened for sequence polymorphism (Materials and Methods). Three sporadic mutations and one common polymorphism were found in four patients in our population. Mutations were identified that encoded M54T-, I57T-, and A116V-MiRP1; the first two were previously identified in patients with sporadic LQTS (9). One patient carried a polymorphism producing T8A-MiRP1, a KCNE2 variant seen previously in 16 of 1,010 control individuals (9). The positions of these residues relative to the cell membrane are indicated on a schematic rendition of the predicted topology of MiRP1 (16) (Fig. 1A).
The KCNE2 mutation that substituted threonine for methionine at amino acid 54 (M54T) was found in a patient who presented with procainamide-induced LQTS. This mutation was seen once before among 230 patients with sporadic LQTS but not in 1,010 controls (9); the antiarrhythmic medication procainamide has been associated with acquired LQTS previously (1).
The missense mutation that substituted a threonine for isoleucine at residue 57 (I57T) was found in a patient with a prolonged QT interval induced by the histamine H1 receptor antagonist oxatomide. This mutation was seen once before among 230 patients with sporadic LQTS (9); oxatomide has not been associated previously with dysrrhythmia.
A novel missense mutation substituting valine for alanine at position 116 (A116V) was found in a 55-year-old white female with a history of cardiac arrest associated with cocaine and alcohol abuse. Subsequent treatment with quinidine and mexiletine was tolerated for 6 years. After mexiletine was discontinued, she had syncope with TdP while on quinidine alone. Evaluation at that time also revealed new-onset heart failure. Sequence analysis revealed a C-to-T transition that was not detected in 1,010 control individuals evaluated previously (9) or in 200 control genes assessed in this study by an allele-specific hybridization assay. The antiarrhythmic quinidine has been associated with acquired LQTS (1).
A fourth missense variant was identified in a 45-year-old white male with a history of Marfan syndrome who had a normal QT interval at baseline but developed marked QT prolongation after three oral doses of TMP/SMX for treatment of a minor infection. Screening revealed a polymorphism that substituted alanine for threonine at MiRP1 position 8 (T8A). This KCNE2 polymorphism was previously seen in 16 of 1,010 control individuals, 1 of 230 patients with sporadic LQTS, and 1 patient with quinidine-induced dysrrhythmia among 20 individuals with drug-induced arrhythmia (9).
To investigate the effects of changes in KCNE2 on channel function, the properties of wild-type and mutant MiRP1/HERG channels were studied by transient expression in CHO cells in whole-cell patch-clamp configuration, as described before (Materials and Methods) (9). The three sporadic mutations (M54T-, I57T- and A116V-MiRP1) produced reductions of 34–47% in current density at −40 mV (that is, whole-cell current divided by membrane capacitance to normalize for cell size), whereas only a 15% decrease was observed with T8A-MiRP1 (Fig. 1B). This was compatible with our prior study showing that channels with M54T-MiRP1 activated less readily and deactivated more rapidly than channels formed with either wild type or T8A-MiRP1 (9). Consistent with these observations, patients carrying M54T-MiRP1 showed slightly prolonged QT intervals in the drug-free state, whereas the patient with T8A-MiRP1, like 17/18 individuals with this genotype studied previously (9), had a normal QT interval at baseline.
The three sporadic mutations identified in our patients with drug-induced LQTS did not alter sensitivity to drug inhibition. Fig. 2A shows currents carried by channels formed with wild-type MiRP1 or A116V-MiRP1 in the absence and presence of quinidine; the two channels showed the same sensitivity to equilibrium blockade (Fig. 2B). Similarly, channels with wild-type MiRP1 or M54T-MiRP1 showed the same sensitivity to procainamide (with equilibrium inhibition constants, Ki, of 190 ± 30 and 185 ± 35 μg/ml, n = 6, respectively), and those with wild-type MiRP1 and I57T-MiRP1 had the same sensitivity to oxatomide (Ki = 0.18 ± 0.05 and 0.18 ± 0.04 μg/ml, n = 5, respectively). Of note, levels of quinidine and oxatomide that achieved half-maximal inhibition of channels in experimental cells were close to their therapeutic concentrations in the plasma of patients (17, 18). In contrast, procainamide and its principle metabolite N-acetylprocainamide achieved half-maximal blockade at levels over 50-fold higher than those found in plasma (19); the metabolite was even less potent than the parent compound (Ki = 400 ± 60 and 390 ± 70 μg/ml for wild-type MiRP1 and M54T-MiRP1, n = 5, respectively). This suggests the proarrhythmic effects of procainimide may not be mediated by IKr channels.
Wild-type and T8A-MiRP1 channels were studied with TMP/SMX, as this agent was associated with a prolonged QT interval in our patient (Fig. 3). Although both channel types were blocked, those with T8A-MiRP1 were ≈2-fold more sensitive to TMP/SMX (Fig. 3A). Each active compound, TMP and SMX, was then investigated separately. Fig. 3B shows that TMP inhibited both channels with similar affinity (Ki ≈ 75 μg/ml); a level of the agent far in excess of its usual plasma level, ≈5 μg/ml (20, 21). In contrast, SMX (633 μg/ml) had almost no effect on wild-type channels but inhibited more than half the flux through channels formed with T8A-MiRP1 at −40 mV (Fig. 3C). Channels with T8A-MiRP1 were at least 4-fold more sensitive to SMX than wild type (Fig. 3D). It seems reasonable to ascribe the proarrhythmic effects of Bactrim in our patient to its SMX component as serum levels for this agent can exceed 300 μg/ml (20, 21).
A notable difference in the effect of SMX on channels formed with T8A-MiRP1 and wild-type MiRP1 was apparent when gating kinetics were evaluated; the drug speeded deactivation (closure) only of channels with the SNP (Table 1). Thus, SMX increased both the fast and slow deactivation time constants for T8A-MiRP1 channels (enhancing τfast and τslow ≈4- and 2-fold, respectively) but had no significant effect on wild-type channels. As shown before (9), channels with the SNP showed a small shift in their half-maximal activation voltage (V1/2) but no change in slope factor (Vs) compared with wild type (Table 1); SMX had no significant effect on the V1/2 or Vs of either channel (Table 1).
Table 1.
Channel (no. of cells) | Activation V1/2, mV | Activation slope, mV | Deactivation τfast, s | Deactivation τslow, s | Deactivation ratio Ifast/(Ifast+Islow) |
---|---|---|---|---|---|
WT (10) | |||||
Control | −20 ± 5 | 9.5 ± 1.4 | 0.4 ± 0.1 | 1.5 ± 0.4 | 0.5 ± 0.1 |
SMX | −20 ± 6 | 9.8 ± 2.2 | 0.3 ± 0.1 | 1.4 ± 0.3 | 0.5 ± 0.2 |
T8A (10) | |||||
Control | −25 ± 6 | 9.0 ± 1.2 | 0.6 ± 0.2 | 1.4 ± 0.4 | 0.5 ± 0.1 |
SMX | −21 ± 5 | 9.4 ± 2.1 | 0.15 ± 0.04 | 0.9 ± 0.3 | 0.5 ± 0.1 |
Activation and deactivation kinetics were estimated in whole-cell recordings in the absence and presence of 633 μg/ml SMX. By using the protocol in Fig. 2, peak-tail currents at −40 mV were normalized and fit to the Boltzmann function: 1/{1+exp[(V1/2−V)/VS]}, where V1/2 is half-maximal voltage and VS the slope factor in mV. Deactivation kinetics were fit to a double exponential function (I0 + Ife(−t/τf) + Ise(−t/τS)) at −40 mV after a prepulse to 20 mV as in Fig. 3.
To approximate the in vivo case with experimental cells, we used a voltage protocol that mimics a cardiac action potential (22) in the presence of physiological levels of drugs associated with LQTS in our patients. Flux of potassium across the membrane in each cycle was estimated from the area under the current curve. Fig. 4A shows raw traces of currents passed by wild-type MiRP1 or A116V-MiRP1 channels in the absence and presence of 0.5 μg/ml quinidine. At baseline, the mutant channels pass 46 ± 6% less potassium than wild type (n = 5). The two channel types were similarly sensitive to drug inhibition showing ≈50% block at this drug dose. Therefore, with drug, A116V-MiRP1 channels passed ≈1/4 of the current carried by unblocked wild-type channels. These findings support the notion that A116V-MiRP1 decreased the ability of the myocardium to repolarize at baseline, placing our patient at increased risk for drug-induced arrhythmia when exposed subsequently to quinidine at therapeutic levels. We suggest superimposed heart failure further reduced repolarization reserve to increase the likelihood of TdP (23).
Figs. 4C shows raw traces of currents passed by wild-type MiRP1 and T8A-MiRP1 channels in the absence and presence of 300 μg/ml SMX. In the absence of drug, channels formed with the T8A-MiRP1 were largely indistinguishable from wild type, as expected (Table 1) (9). Although SMX at this dose did not significantly affect wild-type channels, current through T8A-MiRP1 channels was reduced to half the wild-type level (Fig. 4D; n = 5). Concordant with the observation that SMX speeds deactivation of T8A-MiRP1 channels, peak current was reached more rapidly in the presence of the drug (Fig. 4C), presumably because of increased channel availability, as with a disease-associated mutation of HERG that speeds deactivation (22).
These findings may explain why most patients receive TMP/SMX without incident (24) and others develop QT prolongation and TdP (25, 26). Although the large majority of individuals carry KCNE2 genes encoding wild-type MiRP1, T8A-MiRP1 appears to predispose to arrhythmia by increasing the inhibitory effects of SMX, in part by speeding deactivation, placing 1–2% of the population at increased risk for SMX-induced arrhythmia.
Diseases caused by defects in single genes are rare (27). More common disorders such as diabetes (28), breast cancer (29), or hypertension (30) are thought to be caused by the combined influence of multiple susceptibility genes. So, too, the response of individual patients to drug therapy is expected to be influenced by genomic variation, for example, because of differences in drug metabolism or the structure or function of drug receptor molecules. The most common type of DNA sequence variation, SNPs, are observed at a frequency of ≈1/500–1,000 nucleotides in humans (31), and large-scale screening for SNPs (32) is now under way to advance efforts to identify disease susceptibility genes or to predict the response of individuals to drug therapies (33). Previous studies have indicated that a prolonged QT interval on a baseline electrocardiogram identifies individuals at increased risk for drug-induced arrhythmia, especially when administered medications that block cardiac potassium channels (9, 11). This study argues for the value of a “pharmacogenetic” approach to drug treatment, because it demonstrates that common sequence variations can be clinically silent before drug exposure yet increase the risk for life-threatening drug reactions. With further identification of allelic variants that increase susceptibility to cardiac arrhythmia, preprescription genotyping becomes a consideration.
Acknowledgments
This work was supported by grants from the National Institutes of Health (S.A.N.G., D.M.R., and A.L.G.). A.L.G. is an Established Investigator of the American Heart Association. We are grateful to N. Goldstein for support with graphics.
Abbreviations
- LQTS
long QT syndrome
- MiRP1
MinK-related peptide 1
- SNP
single-nucleotide polymorphism
- TdP
torsades de pointes
- TMP/SMX
trimethoprim/sulfamethoxazole
- CHO
Chinese hamster ovary
Footnotes
This paper was submitted directly (Track II) to the PNAS office.
Article published online before print: Proc. Natl. Acad. Sci. USA, 10.1073/pnas.180223197.
Article and publication date are at www.pnas.org/cgi/doi/10.1073/pnas.180223197
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