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. 2008 Dec 2;18(1):180–195. doi: 10.1002/pro.2

Table V.

OptGraft-predicted Mutations (Step 1) Required for Constructing the Calcium Binding Site into the First Domain of CD2

Geometry score Mutations Distancea (Å)
1 18.7 78V→T 80V→D 89L→D 91K→Q 4.00
2 27.3 54A→D 65I→D 67N→T 69T→Q 3.32
3 27.7 8G→D 9A→T 68L→Q 97I→D 2.80
4 28.3 27I→D 29E→D 81Y→T 88I→Q 2.60
5 30.2 54A→D 66K→D 67N→T 69T→Q 2.75
6 30.4 6V→D 76Y→Q 93L→T 95L→D 2.90
7 30.5 54A→D 65I→D 67N→T 68T→Q 4.06
8 31.5 15N→D 16L→D 58L→Q 63L→T 2.03
9 31.8 78V→T 80V→Q 89L→D 91K→D 4.45
10 32.1 8G→D 9A→T 12H→Q 97I→D 2.67
11 32.2 6V→Q 76Y→D 93L→D 94D→T 3.04
12 32.8 28D→T 29E→D 44R→Q 81Y→D 2.55
13 33.3 16L→Q 58L→D 62D→D 63L→T 0.77
14 33.5 33E→T 39V→Q 76Y→D 77N→D 0.85
15 33.8 6V→D 16L→D 76Y→Q 93L→T 3.97
16 33.9 6V→D 76T→Q 94D→T 95L→D 2.85
17 34.2 27I→D 28D→D 81Y→T 88I→Q 2.84
18 34.3 78V→D 80V→Q 89L→T 91K→D 4.25
19 34.8 50L→D 51K→D 52S→T 54A→Q 3.22
20 34.8 32W→D 33E→T 39V→D 77N→Q 2.04
21 35.4 4G→Q 78V→D 91K→D 92A→T 1.99
22 35.7 32W→T 39V→Q 76Y→D 77N→D 1.79
23 36.0 8G→D 68L→T 72D→Q 97I→D 4.79
24 36.2 9A→D 12H→T 14I→Q 68L→D 3.93
25 36.3 8G→D 12H→T 14I→D 68L→Q 3.61
26 36.7 29E→D 31R→Q 79T→T 81Y→D 4.30
27 36.8 32W→Q 38L→D 40A→T 49F→D 2.37
28 37.43 32W→D 38L→D 40A→T 49F→Q 2.10
29 37.51 16L→D 58L→Q 62D→D 63L→T 2.95
30 37.55 9A→T 12H→D 68L→D 98L→Q 2.46
a

Distance between the calcium and the nearest Cα atom in the protein backbone. The vdw radii for calcium and carbon are 1.95 and 1.55 Å, respectively.