Table 6.
Major known genes by functional class in the L3c gene set
| Function class | Gene | oligo ID | Fold | NCBI accession number and description |
| protein synthesis | ||||
| rRNA promoter binding (1) | BMC10335 | 4.6 | NP_671477.1| rRNA promoter binding protein | |
| RNA binding (3) | BMC04564 | 2.5 | AAC47624.1| putative RNA binding protein | |
| Elongation Factor (5) | AA842168 | 4.7 | CAB40840.1| elongation factor 1 beta | |
| rps or rpl ((38) | BMC00849 | 4.6 | AAN05602.1| ribosomal protein S7 | |
| Zinc finger (8) | 14287.m00022 | 9.7 | P_698623.1| PREDICTED: similar to zinc finger | |
| hsp(1) | 13293.m00125 | 9.5 | AAY66912.1| putative heat shock-related protein | |
| Pin1 (2) | AA109462 | 6.5 | AAD01597.1| peptidyl-prolyl cis-trans isomerase | |
| cell cycle | ||||
| mab-21 (1) | BMC02725 | 4.5 | NP_497940.2| Male ABnormal family member (mab-21) | |
| tctp (Tph) (1) | BMC12076 | 2.9 | AAK71499.1| translationally controlled tumor protein-like protein | |
| Histone (7) | 12698.m00329 | 13.5 | P30757|H2B_SIPNU Histone H2B | |
| Actin (1) | BMC06331 | 6 | AAU94673.1| actin | |
| Tubulin (3) | BMC01602 | 3.2 | AAA27865.1| beta-tubulin | |
| fiber growth | ||||
| MSP fiber proteins (MFP) (2) | BMC01338 | 6.9 | AAP94887.1| MFP3 | |
| BMC02125 | 3.7 | AAP94885.1| MFP1-beta | ||
| development cell phagocytosis | sHSP (2) | 15334.m00009 | 4.7 | CAA61152.1| small heat shock protein |
| ced-2 (1) | 14972.m07627 | 7.8 | NP_500105.1| CEll Death abnormality family member (ced-2) |
Numbers in parentheses represent the number of oligos that match a particular gene that was upregulated.