Table 2.

Results of dichotomous trait analysis

Name	Locationa	HW	Call rate	Casesb MAF	Controlsb MAF	PCOS		Metabolic syndrome
						Y2c	P valued	Y2c	P valued
rs11196152	114676795	0.466	99.3	0.509	0.499	0.001	0.976	0.191	0.662
rs10885392	114683123	0.687	99.4	0.265	0.270	0.083	0.773	1.374	0.241
rs17746916	114694771	0.363	99.4	0.075	0.061	1.486	0.223	0.000	1.000
rs3814570	114698500	0.540	99.2	0.263	0.288	0.532	0.466	0.610	0.435
rs2094405	114705679	0.997	99.4	0.287	0.267	0.387	0.534	0.312	0.576
rs6585194	114707461	0.903	99.4	0.287	0.271	0.165	0.685	0.077	0.781
rs6585195	114712944	0.166	99	0.135	0.137	0.023	0.879	0.022	0.882
rs10885399	114716167	0.04	99.4	0.216	0.217	0.009	0.924	0.021	0.885
rs7917983	114722872	0.790	99.6	0.488	0.486	0.003	0.958	0.509	0.476
rs11196175	114726604	0.527	99.4	0.282	0.282	0.079	0.779	4.012	0.045
rs7081062	114730735	0.658	99.4	0.369	0.366	0.062	0.803	0.180	0.671
rs4074718	114738607	0.771	99.4	0.475	0.464	0.390	0.532	0.109	0.741
rs11196181	114739008	0.307	99.4	0.071	0.068	0.044	0.834	0.124	0.725
rs17747324	114742493	0.458	99.4	0.226	0.233	0.751	0.386	1.701	0.192
rs4506565	114746031	0.991	99.1	0.309	0.319	0.511	0.475	0.940	0.332
rs7896811	114756707	0.798	99.2	0.153	0.15	0.318	0.573	0.807	0.369
rs11196192	114772277	0.898	99.6	0.070	0.076	0.000	1.000	0.369	0.544
rs11196199	114786107	0.792	98.7	0.171	0.159	1.011	0.315	0.783	0.376
rs17685538	114787461	0.192	99.7	0.111	0.120	0.808	0.369	1.819	0.177
rs7895340	114791515	0.645	99.8	0.468	0.464	0.088	0.767	0.003	0.958
rs12255372	114798892	1	99.6	0.273	0.295	1.438	0.230	0.977	0.323
rs12245680	114810181	0.543	99.2	0.095	0.104	0.132	0.716	0.497	0.481
rs4918789	114811797	0.172	99.3	0.464	0.464	0.003	0.958	1.118	0.290
rs10885410	114814463	1	99.3	0.262	0.268	0.130	0.718	1.693	0.193
rs7919409	114814966	0.503	99.2	0.111	0.120	0.153	0.696	0.646	0.422
rs7100388	114815803	0.698	99.4	0.107	0.094	0.554	0.457	0.037	0.847
rs7908486	114824488	0.444	99.1	0.354	0.365	0.066	0.797	0.786	0.375
rs12184389	114829760	0.404	99.4	0.172	0.139	3.188	0.074	0.087	0.768
rs11196218	114830484	0.261	99.5	0.278	0.261	0.402	0.526	0.436	0.509
rs3750805	114837133	0.186	99.5	0.117	0.120	0.118	0.731	0.007	0.933
rs3814572	114837713	0.256	99.4	0.133	0.176	6.515	0.0106	0.092	0.762
rs11196224	114845387	0.673	99.6	0.318	0.273	4.036	0.045	0.012	0.913
rs6585206	114849241	1	99	0.185	0.171	0.729	0.393	0.208	0.648
rs7085532	114849453	0.053	99.8	0.321	0.288	2.611	0.106	0.533	0.465
rs10885414	114851294	0.055	99	0.277	0.335	6.975	0.0083	0.330	0.566
rs11196228	114854287	0.478	99.2	0.096	0.077	3.067	0.080	0.202	0.653
rs10749128	114855479	0.376	93.5	0.257	0.22	2.814	0.093	0.332	0.564
rs11196229	114856162	0.327	99.5	0.207	0.269	9.005	0.0027	0.001	0.976
rs4918796	114870332	0.231	99.4	0.25	0.206	6.155	0.013	0.013	0.909
rs12772424	114870541	0.146	99.3	0.401	0.387	0.377	0.539	0.300	0.584
rs290494	114875861	0.363	99	0.159	0.171	0.339	0.560	0.128	0.721
rs11196236	114877712	0.175	99.4	0.246	0.189	10.973	0.0009	0.000	1.000
rs1362943	114878598	0.480	99.7	0.310	0.345	2.611	0.106	0.006	0.938
rs3814573	114888083	0.032	99.7	0.340	0.367	2.119	0.145	0.126	0.723
rs10787476	114888904	0.251	99.4	0.061	0.058	0.011	0.916	0.828	0.363
rs290489	114897045	0.987	99.1	0.235	0.243	0.689	0.407	3.279	0.070
rs290488	114898972	0.003	82.9	0.061	0.066	0.164	0.686	0.113	0.727
rs17686448	114900402	1	99.5	0.048	0.040	0.006	0.938	0.627	0.428
rs176632	114901069	0.817	99.8	0.139	0.149	0.131	0.717	0.222	0.638
rs1555485	114902524	0.312	99	0.190	0.211	1.732	0.188	0.470	0.493
rs1028629	114902646	0.679	99.4	0.160	0.186	2.336	0.126	0.931	0.335
rs11595128	114903468	0.715	99.4	0.142	0.165	2.967	0.085	1.740	0.187
rs1225404	114904655	0.102	98.9	0.337	0.364	1.485	0.223	0.209	0.648
rs290483	114905204	0.336	99.5	0.382	0.401	0.801	0.371	0.321	0.571
rs290481	114913815	0.672	99.8	0.159	0.156	0.037	0.847	2.148	0.143
rs12243558	114930492	0.145	99.2	0.217	0.203	0.373	0.541	1.758	0.185
rs7915609	114932355	0.077	99.6	0.225	0.222	0.012	0.913	0.435	0.510
rs11196260	114934868	0.570	99.8	0.036	0.029	0.810	0.368	1.005	0.316

MAF, Minor allele frequency; HW, Hardy Weinberg Equilibrium. 

^aLocation on chromosome based on dbSNP build 125. 

^bMinor allele defined based on control frequency. 

^cCorrected for population stratification using genomic control λ = 1.07. 

^dObserved P value.