Table 5.
Comparison between QMEAN and QMEANclust in the task of selecting near native models on the MOULDER test set.
| ΔRMSD [Å] | ||||
| targets | median RMSD [Å] | # < 5Å | QMEAN | QMEANclust |
| 2cmd | 5.76 | 100 | 2.75 | 0.67 |
| 1bbh | 6.49 | 86 | 0.00 | 0.17 |
| 2mta | 6.66 | 119 | 0.29 | 0.31 |
| 1dxt | 7.19 | 79 | 1.11 | 0.72 |
| 2pna | 7.29 | 57 | 0.14 | 0.14 |
| 1lga | 8.17 | 106 | 0.82 | 1.10 |
| 1mup | 8.18 | 65 | 0.40 | 0.36 |
| 8i1b | 8.34 | 115 | 0.62 | 0.47 |
| 2afn | 8.54 | 42 | 0.12 | 0.58 |
| 2fbj | 8.84 | 59 | 0.29 | 0.26 |
| 1mdc | 9.27 | 105 | 0.07 | 0.18 |
| 1onc | 10.46 | 106 | 0.47 | 0.15 |
| 1c2r | 10.46 | 7 | 0.00 | 1.95 |
| 2sim | 10.98 | 55 | 0.00 | 0.96 |
| 1cid | 11.16 | 0 | 0.11 | 0.63 |
| 1gky | 11.56 | 15 | 0.66 | 1.16 |
| 1cau | 11.92 | 11 | 0.42 | 3.54 |
| 1eaf | 12.64 | 1 | 0.34 | 1.72 |
| 1cew | 14.74 | 21 | 2.77 | 2.24 |
| 4sbv | 17.40 | 1 | 0.00 | 5.74 |
| average | 9.80 | 57.5 | 0.57 | 1.15 |
The first two data columns contain the median RMSD of the models in the decoy set and the number of models with RMSD < 5 Å (out of totally 300). For all 20 target proteins, the RMSD difference (in Ångstrom) is given between the selected model and best model in the ensemble.