Table 1.
Library ID | Size fraction | Tissue | Number of clones | Number of clusters | Number of high quality selected clones |
---|---|---|---|---|---|
176, 196, 213, 225, CL11 | Short | Mixed male/female infl., roota | 57,317 | 13,623 | 1,601 |
177, 191, 197, 214, 226 | Medium | Mixed male/female infl., roota | 111,196 | 22,519 | 4,102 |
199, 222, 227, CL12 | Long | Mixed male/female infl., roota | 89,052 | 18,269 | 1,263 |
259, 260, 264, CN2 | None | Mixed male/female infl., roota | 8,656 | 5,616 | 93 |
298, 301, C298, CN, CN10, CN101, CN22, CN23, CN24, CL13, CN31, CN32 | None | Embryo (20 DAP)a | 77,855 | 16,507 | 1,067 |
501 | 0.0–0.5 | Treated tissues | 6,400 | 4,396 | 34 |
502 | 0.5–1.0 | Treated tissues | 19,318 | 6,700 | 294 |
503, 507 | 1.0–2.0 | Treated tissues | 24,850 | 10,050 | 629 |
504, 504N, 505, 506 | >2 | Treated tissues | 49,074 | 14,225 | 672 |
600, 601, 602, 604 | None | Female flower | 3,423 | 1,894 | 19 |
605 | >1 kb | Female flower | 700 | 549 | 5 |
606 | 0.5–1.0 | Female flower | 9,382 | 3,626 | 61 |
607 | <0.5 | Female flower | 588 | 535 | 2 |
CB5, CB6 | >2 | Immature M/F flower, kernel, embryo | 22,728 | 3,265 | 31 |
CC1 | <1 kb | Callus tissue | 1,135 | 790 | 32 |
CC2 | >1 kb | Callus tissue | 275 | 190 | 4 |
CR1 | None | Corn roots (different treatments) | 1,915 | 1,544 | 42 |
Other | 35 | 35 | |||
GenBankb | 133 | 133 | 133 | ||
Total | 484,032 | 10,084 |
Source of the libraries, number of clones and number of clusters in each sample are listed. Treated tissues were collected from seedlings that were subjected to a variety of stress treatments including heat, cold, drought, salt and N-deficiency
aLibraries were derived from Pioneer Hi-Bred International, Inc Hybrid 35A19. All other libraries were derived from various other hybrids
bThese sequences were made full-length by assembling GenBank ESTs per clone