Table 6.
Results of the statistical analysis of the expression data from the four cultivars NB, TB, LC and IR measured by qRT-PCR for 45 genes
| Oligo ID | Locus ID | Annotation (TIGR Version 5) | p d − c | p Inter |
|---|---|---|---|---|
| TR000232 | LOC_Os01g04860 | Expressed protein | 0.016 | 0.085 |
| TR000321 | LOC_Os01g06310 | Glycine-rich cell wall structural protein precursor, putative, expressed | 0.000 | 0.609 |
| TR000345 | LOC_Os01g06740 | Protein synthesis inhibitor I, putative, expressed | 0.002 | 0.098 |
| TR002928 | LOC_Os01g60260 | Protein held out wings, putative, expressed | 0.674 | 0.115 |
| TR003102 | LOC_Os01g63060 | Expressed protein | 0.030 | 0.017 |
| TR003185 | LOC_Os01g64660 | Fructose-1,6-bisphosphatase, cytosolic, putative, expressed | 0.210 | 0.452 |
| TR003619 | LOC_Os01g72370 | ORG3, putative, expressed | 0.001 | 0.286 |
| TR005088 | LOC_Os02g41470 | Lysyl-tRNA synthetase, putative, expressed | 0.000 | 0.432 |
| TR006178 | LOC_Os03g03510 | CIPK-like protein 1, putative, expressed | 0.073 | 0.050 |
| TR006269 | LOC_Os03g04710 | Expressed protein | 0.001 | 0.702 |
| TR006722 | LOC_Os03g11900 | Sugar transport protein 8, putative, expressed | 0.000 | 0.183 |
| TR006919 | LOC_Os03g14990 | Chorismate synthase 2, chloroplast precursor, putative, expressed | 0.049 | 0.019 |
| TR006994 | LOC_Os03g16050 | Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed | 0.013 | 0.220 |
| TR007134 | LOC_Os03g18130 | Asparagine synthetase, putative, expressed | 0.013 | 0.162 |
| TR007277 | LOC_Os03g20100 | 30S ribosomal protein S1, chloroplast precursor, putative, expressed | 0.000 | 0.453 |
| TR007351 | LOC_Os03g21370 | Expressed protein | 0.000 | 0.766 |
| TR007427 | LOC_Os03g22620 | Terpene synthase 7, putative, expressed | 0.000 | 0.212 |
| TR007848 | LOC_Os03g37490 | Transparent testa 12 protein, putative, expressed | 0.584 | 0.043 |
| TR007941 | LOC_Os03g40020 | Rf1 protein, mitochondrial precursor, putative, expressed | 0.043 | 0.415 |
| TR008098 | LOC_Os03g44810 | Expressed protein | 0.098 | 0.121 |
| TR008765 | LOC_Os03g56930 | Protein app1, putative, expressed | 0.598 | 0.000 |
| TR008795 | LOC_Os03g57640 | Gibberellin receptor GID1L2, putative, expressed | 0.097 | 0.059 |
| TR008838 | LOC_Os03g58400 | N/A | 0.081 | 0.094 |
| TR008946 | LOC_Os03g60100 | 50S ribosomal protein L17, putative, expressed | 0.000 | 0.105 |
| TR009108 | LOC_Os03g62630 | Structural constituent of ribosome, putative, expressed | 0.000 | 0.094 |
| TR010306 | LOC_Os04g38680 | Amino acid/polyamine transporter II, putative, expressed | 0.000 | 0.393 |
| TR011061 | LOC_Os04g52090 | Ethylene-responsive transcription factor 4, putative, expressed | 0.000 | 0.050 |
| TR011145 | LOC_Os04g53210 | Hydroxyacid oxidase 1, putative, expressed | 0.001 | 0.071 |
| TR011237 | LOC_Os04g55600 | Expressed protein | 0.817 | 0.252 |
| TR011248 | LOC_Os04g55710 | Transposon protein, putative, unclassified, expressed | 0.006 | 0.054 |
| TR011361 | LOC_Os04g57550 | Lysine-specific histone demethylase 1, putative, expressed | 0.928 | 0.409 |
| TR012002 | LOC_Os05g39250 | Expressed protein | 0.000 | 0.037 |
| TR012195 | LOC_Os05g46480 | Late embryogenesis abundant protein, group 3, putative, expressed | 0.000 | 0.020 |
| TR012608 | LOC_Os06g08720 | Serine carboxypeptidase K10B2.2 precursor, putative, expressed | 0.017 | 0.601 |
| TR012706 | LOC_Os07g02330 | Catalytic/ protein phosphatase type 2C, putative, expressed | 0.000 | 0.006 |
| TR012727 | LOC_Os07g02710 | Expressed protein | 0.000 | 0.126 |
| TR012858 | LOC_Os07g04930 | Vegetative cell wall protein gp1 precursor, putative, expressed | 0.000 | 0.516 |
| TR013075 | LOC_Os07g08840 | Thioredoxin H-type, putative, expressed | 0.008 | 0.112 |
| TR013365 | LOC_Os07g15460 | Metal transporter Nramp6, putative, expressed | 0.000 | 0.059 |
| TR014542 | LOC_Os07g44410 | WD40-like Beta Propeller Repeat family protein, expressed | 0.000 | 0.000 |
| TR014718 | LOC_Os07g47590 | Expressed protein | 0.288 | 0.000 |
| TR014740 | LOC_Os07g47990 | Peroxidase 2 precursor, putative, expressed | 0.002 | 0.039 |
| TR014832 | LOC_Os07g49270 | AMP deaminase, putative, expressed | 0.000 | 0.007 |
| TR014937 | LOC_Os08g02490 | DNA-binding protein, putative, expressed | 0.002 | 0.166 |
| TR020013 | LOC_Os12g37690 | MYB transcription factor, putative, expressed | 0.000 | 0.032 |
p-Values of the ANOVA lower than 0.1 for the treatment contrast (p d − c) and the condition x tolerance interaction (p Inter) are printed in bold. Expression values were measured on three replicate plants per treatment from one biological experiment that was independent of the three experiments used for expression profiling