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. 2009 Jul 7;10(Suppl 1):S11. doi: 10.1186/1471-2164-10-S1-S11

Table 2.

Examples of lineage-unique LSE families in representative Vibrionaceae genomes. The number in parenthesis shows the number of lineage-unique LSE families in each genome

Strain Function description No. genes in families
V. cholerae O395 (49) DNA circulation protein 2
DNA transposition protein 2
Tail tube protein 2
Phage virion morphogenesis protein 2
gp27/gp16/gp05 6

V. parahaemolyticus RIMD 2210633 (24) Type 1 pili subunit CsuA/B protein 2
Dienelactone hydrolase domain protein 2
Site-specific recombinase 2

V. vulnificus CMCP6 (16) Permease of the major facilitator superfamily 2
Transposase 2
Cation transport ATPase 2
Cobalamin biosynthesis protein CobW 2

V. vulnificus YJ016 (11) 4-hydroxyphenylacetate degradation bifunctionalisomerase 2
CRISPR-associated protein 4

V. splendidus LGP32 (13) Transposase of insertion sequence ISVisp4 18
Protein sufB 2
Sensory box histidine kinase/response regulator 2

A. fischeri MJ11 (10) Response regulator receiver protein 2
Acetyltransferase 3

A. fischeri ES114 (3) Anaerobic glycerol-3-phosphate dehydrogenase subunit C (RebB) 9

A. salmonicida LFI1238 (12) DNA-binding protein HU-alpha 2
Phage replication repressor RstR 2
Shufflon-specific DNA recombinase 2
Transposase of insertion sequence families 102

P. profundum SS9 (90) Selenoprotein A of glycine-reductase 2
NosR, Regulator of nitric oxide reductase transcription 2
Acetolactate synthase, iolD 2
Myo-inositol catabolismprotein iolB 2
Anaerobic dicarboxylate transporter 2
Alpha-galactosidase (melibiase) 2
Protease/scaffold protein 2
Sodium: dicarboxylate symporter 3
Methyl-accepting chemotaxis protein 3
Reverse transcriptase/maturase family protein 3
Helix-turn-helix XRE-family like proteins 8
Transposase 36