Table 1.
Comparison of plant TF databases
| RARTF | AGRIS | DATF | PlnTFDB | |||||
|---|---|---|---|---|---|---|---|---|
| Family | Loci | Family | Loci | Family | Loci | Family | Loci | |
| 1. | ABI3/VP1 | 51 | ABI3VP1 | 11 | ABI3-VP1 | 60 | ABI3VP1 | 56 |
| REM | 21 | |||||||
| 2. | Alfin-like | 47 | Alfin-like | 7 | Alfin | 7 | Alfin-like | 7 |
| 3. | AP2/EREBP | 93 | AP2-EREBP | 136 | AP2-EREBP | 146 | AP2-EREBP | 146 |
| ERF | 19 | |||||||
| Pti4 | 5 | |||||||
| Pti5 | 5 | |||||||
| Pti6 | 18 | |||||||
| 4. | ARF | 71 | ARF | 22 | ARF | 23 | ARF | 23 |
| RAV | 11 | |||||||
| 5. | ARID | 6 | ARID | 7 | ARID | 10 | ARID | 10 |
| 6. | AT-hook | 31 | – | – | – | – | – | – |
| 7. | – | – | – | – | AS2 | 42 | – | – |
| 8. | Aux/IAA | 21 | – | – | AUX-IAA | 28 | AUX/IAA | 27 |
| 9. | – | – | BBR/BPC | 7 | BBR-BPC | 7 | BBR/BPC | 7 |
| 10. | – | – | BZR | 6 | BES1 | 8 | BES1 | 8 |
| 11. | bHLH | 157 | bHLH | 162 | bHLH | 127 | bHLH | 134 |
| 12. | – | – | – | – | – | – | bHSH | 1 |
| 13. | bZIP | 56 | bZIP | 73 | bZIP | 72 | bZIP | 71 |
| TGA3 | 27 | |||||||
| 14. | C2C2(Zn)-CO-like | 51 | C2C2-CO-like | 30 | C2C2-CO-like | 37 | C2C2-CO-like | 17 |
| Pseudo ARR-B | 5 | |||||||
| 15. | C2C2(Zn)-Dof | 33 | C2C2-Dof | 36 | C2C2-Dof | 36 | C2C2-Dof | 36 |
| 16. | C2C2(Zn)-GATA | 37 | C2C2-Gata | 30 | C2C2-GATA | 26 | C2C2-GATA | 29 |
| 17. | C2C2(Zn)-YABBY | 5 | C2C2-YABBY | 6 | C2C2-YABBY | 5 | C2C2-YABBY | 6 |
| 18. | C2H2(Zn) | 177 | C2H2 | 211 | C2H2 | 134 | C2H2 | 96 |
| 19. | C3H-type 1(Zn) | 37 | C3H | 165 | C3H | 59 | C3H | 67 |
| 20. | – | – | CAMTA | 6 | CAMTA | 6 | CAMTA | 6 |
| 21. | CBF5 | 2 | – | – | – | – | – | – |
| 22. | CCAAT | 37 | CCAAT-DR1 | 2 | CCAAT-Dr1 | 2 | CCAAT | 43 |
| CCAAT-HAP2 | 10 | CCAAT-HAP2 | 10 | |||||
| CCAAT-HAP3 | 10 | CCAAT-HAP3 | 11 | |||||
| CCAAT-HAP5 | 13 | CCAAT-HAP5 | 13 | |||||
| 23. | CPP(ZN) | 8 | CPP | 8 | CPP | 8 | CPP | 8 |
| 24. | – | – | – | – | – | – | CSD | 4 |
| 25. | – | – | – | – | – | – | DBP | 4 |
| 26. | – | – | – | – | – | – | DDT | 4 |
| 27. | E2F/DP | 8 | E2F-DP | 8 | E2F-DP | 8 | E2F-DP | 7 |
| 28. | EIL | 6 | EIL | 6 | EIL | 6 | EIL | 6 |
| 29. | – | – | – | – | FHA | 16 | FHA | 17 |
| 30. | GARP | 51 | G2-like | 40 | GARP-G2-like | 42 | G2-like | 39 |
| ARR-B | 15 | GARP-ARR-B | 10 | ARR-B | 13 | |||
| 31. | – | – | GeBP | 16 | GeBP | 21 | GeBP | 20 |
| 32. | – | – | – | – | GIF | 3 | – | – |
| 33. | GRAS | 32 | GRAS | 31 | GRAS | 33 | GRAS | 33 |
| 34. | – | – | GRF | 9 | GRF | 9 | GRF | 9 |
| 35. | HB | 97 | Homeobox | 91 | HB | 87 | HB | 91 |
| PAIRED(w/o HB) | 2 | |||||||
| 36. | HMG-box | 11 | – | – | HMG | 11 | HMG | 11 |
| 37. | – | – | HRT | 3 | HRT-like | 2 | HRT | 2 |
| 38. | HSF | 27 | HSF | 21 | HSF | 23 | HSF | 23 |
| 39. | C3H-type 2(Zn) | 10 | JUMONJI | 5 | JUMONJI | 17 | Jumonji | 17 |
| JUMONJI | 13 | |||||||
| 40. | LFY | 3 | LFY | 1 | LFY | 1 | LFY | 1 |
| 41. | LIM-domain | 6 | – | – | LIM | 13 | LIM | 6 |
| 42. | – | – | – | – | LUG | 2 | LUG | 2 |
| 43. | MADS | 106 | MADS | 109 | MADS | 102 | MADS | 102 |
| 44. | – | – | – | – | MBF1 | 3 | MBF1 | 3 |
| 45. | MYB superfamily | 189 | MYB | 130 | MYB | 149 | MYB | 145 |
| MYB-related | 67 | MYB-related | 49 | MYB-related | 64 | |||
| 46. | NAC | 106 | NAC | 94 | NAC | 105 | NAC | 101 |
| 47. | Nin-like | 14 | NLP | 9 | Nin-like | 14 | RWP-RK | 14 |
| AtRKD | 5 | |||||||
| 48. | – | – | – | – | NZZ | 1 | NOZZLE | 1 |
| 49. | PcG; E(z) class | 32 | PcG | 34 | SET | 33 | ||
| PcG; Esc class | 3 | |||||||
| 50. | PHD-fi nger | 9 | PHD | 11 | PHD | 55 | PHD | 43 |
| 51. | – | – | – | – | PLATZ | 10 | PLATZ | 11 |
| 52. | – | – | – | – | – | – | RB | 1 |
| 53. | – | – | – | – | S1Fa-like | 3 | S1Fa-like | 3 |
| 54. | – | – | – | – | SAP | 1 | SAP | 1 |
| 55. | SBP | 17 | SBP | 16 | SBP | 16 | SBP | 16 |
| 56. | Sir2 | 2 | – | – | – | – | – | – |
| 57. | – | – | – | – | – | – | Sigma70-like | 6 |
| 58. | – | – | – | – | SRS | 10 | SRS | 10 |
| 59. | – | – | – | – | – | – | SNF2 | 38 |
| 60. | SW13 | 6 | – | – | – | – | – | – |
| 61. | Swi4/Swi6 | 1 | – | – | – | – | – | – |
| 62. | – | – | – | – | TAZ | 9 | TAZ | 8 |
| 63. | TCP | 24 | TCP | 26 | TCP | 23 | TCP | 24 |
| 64. | Trihelix | 31 | Trihelix | 29 | Trihelix | 26 | Trihelix | 23 |
| 65. | TUB | 11 | TUB | 10 | TLP | 11 | TUB | 10 |
| 66. | – | – | – | – | ULT | 2 | ULT | 2 |
| 67. | – | – | VOZ | 2 | VOZ | 2 | VOZ | 2 |
| 68. | VIP3 | 1 | – | – | – | – | – | – |
| 69. | – | – | Whirly | 3 | Whirly | 2 | PBF-2-like | 3 |
| 70. | WRKY(Zn) | 72 | WRKY | 72 | WRKY | 72 | WRKY | 72 |
| 71. | – | – | ZF-HD | 15 | ZF-HD | 16 | zf-HD | 17 |
| 72. | – | – | ZIM | 2 | ZIM | 18 | ZIM | 15 |
| Other | 81 | Other | 1 | Other | 69 | |||
| Total | 1965 | Total | 1837 | 1837 Total | 1914 | Total | 1949 | |
The number of loci in each database is shown. ‘–’ indicates that no corresponding TF family is defined in the database.