Table 1.
Seven heterozygous SNPs in USF1 bound regions
Name | SNP label | Sequencea | Heterozygous in |
---|---|---|---|
SNP1 | rs1867760 | AA[T/C]ACGTGACCC | HepG2, HT29 |
SNP2 | rs2754775 | A[C/A]CACGTGACCA | HepG2 |
SNP3 | rs16875109 | CTCA[T/C]GTGACCT | Colon1 |
SNP4 | rs1544702 | CTCAC[G/A]TGACAT | Colon2 |
SNP5 | rs4787645 | AGCACGTGAC[G/A]T | Colon1 |
SNP6 | rs11696955 | GAC[A/G]CGTGACTT | HepG2 |
SNP7 | rs9920753 | TTCACGTG[A/T]CAA | Colon2 |
The underlined bases are predicted USF1-binding sites. The last column indicates the samples where the SNP was heterozygous. Additional information about these SNPs, including ChIP-analysis results, is available in Supplementary Table S2.