TABLE 1.
Troubleshooting table.
Problem | Cause | Solution | Example image |
---|---|---|---|
Beam not visible | Insufficient blotting, ice much too thick | Increase blotting time or number of blots or change the blotting paper | Figure 2b (TI) |
Poor contrast | Insufficient blotting, ice too thick | Increase blotting time or number of blots or change the blotting paper | |
Dense background from Buffer | Verify if the levels of sucrose, glycerol, etc. are below 5% | ||
Build-up of contamination in the column | Verify if anticontaminator is operational, desiccate or remove the film loaded into scope | ||
Uneven or splotchy ice | Hydrophobic grid surface | Pre-clean grids; use fresh carbon and glow-discharged grids before applying the sample | Figure 2b (SP) |
Excess contamination | Poor transfer or handling | Shorten the time the sample and cold tools are exposed to a wet environment | Figure 2b (BC) |
Ethane impurities | Use high-grade ethane; do not shake the ethane tank; when tank is close to becoming empty, change the tank | Figure 2a | |
Crystalline ice | Improper plunging | Verify that the grid is plunging deep and fast enough into the cryogen | Figure 2c (X), (V) |
Devitrification due to handling with warm tools | Precool tools and verify all contact surfaces are below −140 °C | ||
Poor thermal contact of grid with holder | Clean the sample boat or verify that the clip ring is tight | ||
Freeze-dried sample | Severe heating, excess blotting (rare) | Verify that all contact surfaces are below −140 °C | Figure 2d |
Degraded sample | Hostile substrate surface Properties | Use another batch of grids, clean grids and glow-discharge grids | |
Elevated salt concentration due to on-grid evaporation | Use two-side blot; blot in a high-humidity environment |