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. Author manuscript; available in PMC: 2009 Jul 14.
Published in final edited form as: Nat Protoc. 2007;2(12):3239–3246. doi: 10.1038/nprot.2007.452

TABLE 1.

Troubleshooting table.

Problem Cause Solution Example image
Beam not visible Insufficient blotting, ice much too thick Increase blotting time or number of blots or change the blotting paper Figure 2b (TI)
Poor contrast Insufficient blotting, ice too thick Increase blotting time or number of blots or change the blotting paper
Dense background from Buffer Verify if the levels of sucrose, glycerol, etc. are below 5%
Build-up of contamination in the column Verify if anticontaminator is operational, desiccate or remove the film loaded into scope
Uneven or splotchy ice Hydrophobic grid surface Pre-clean grids; use fresh carbon and glow-discharged grids before applying the sample Figure 2b (SP)
Excess contamination Poor transfer or handling Shorten the time the sample and cold tools are exposed to a wet environment Figure 2b (BC)
Ethane impurities Use high-grade ethane; do not shake the ethane tank; when tank is close to becoming empty, change the tank Figure 2a
Crystalline ice Improper plunging Verify that the grid is plunging deep and fast enough into the cryogen Figure 2c (X), (V)
Devitrification due to handling with warm tools Precool tools and verify all contact surfaces are below −140 °C
Poor thermal contact of grid with holder Clean the sample boat or verify that the clip ring is tight
Freeze-dried sample Severe heating, excess blotting (rare) Verify that all contact surfaces are below −140 °C Figure 2d
Degraded sample Hostile substrate surface Properties Use another batch of grids, clean grids and glow-discharge grids
Elevated salt concentration due to on-grid evaporation Use two-side blot; blot in a high-humidity environment