Table 1.
Transcript variant (NCBI accession no.), microRNA ID | Score | Energy | Base P | Start | End |
---|---|---|---|---|---|
NM_012340 | |||||
hsa-miR-184 | 19.7351 | −25.74 | 6.81 × 10−4 | 329 | 350 |
hsa-miR-135a | 18.3064 | −14.69 | 7.16 × 10−3 | 89 | 111 |
hsa-miR-494 | 18.2857 | −14.34 | 8.75 × 10−3 | 285 | 306 |
hsa-miR-765 | 18.1568 | −25.71 | 2.32 × 10−2 | 159 | 179 |
hsa-miR-23a | 17.8397 | −26.38 | 2.06 × 10−2 | 129 | 150 |
hsa-miR-30b | 17.7282 | −23.31 | 3.38 × 10−2 | 173 | 194 |
hsa-miR-29c | 17.6167 | −17.7 | 1.05 × 10−2 | 324 | 344 |
hsa-miR-29a | 17.6167 | −17.64 | 1.01 × 10−2 | 324 | 344 |
hsa-miR-342-5p | 17.5964 | −20.89 | 1.27 × 10−2 | 305 | 325 |
hsa-miR-135b | 17.4188 | −13.41 | 1.57 × 10−2 | 89 | 111 |
hsa-miR-30c-1 | 17.2822 | −18.77 | 3.15 × 10−2 | 173 | 194 |
hsa-miR-30c-2 | 17.2822 | −17.22 | 2.72 × 10−2 | 173 | 194 |
hsa-miR-302b | 17.1707 | −9.66 | 1.71 × 10−2 | 24 | 45 |
hsa-miR-302d | 17.1707 | −13.13 | 1.34 × 10−2 | 24 | 45 |
hsa-miR-29b | 17.086 | −16.53 | 1.85 × 10−2 | 323 | 344 |
hsa-miR-29a | 17.0592 | −16.65 | 3.67 × 10−2 | 74 | 95 |
hsa-miR-21 | 17.036 | −14.3 | 1.45 × 10−2 | 323 | 344 |
hsa-miR-801 | 17.0057 | −26.53 | 1.09 × 10−2 | 196 | 219 |
NM_173091 | |||||
hsa-miR-184 | 20.1255 | −25.74 | 4.53 × 10−4 | 229 | 250 |
hsa-miR-494 | 18.6473 | −14.34 | 6.44 × 10−3 | 185 | 206 |
hsa-miR-765 | 18.5179 | −25.71 | 1.69 × 10−2 | 59 | 79 |
hsa-miR-23a | 18.1925 | −26.38 | 1.51 × 10−2 | 29 | 50 |
hsa-miR-30b | 18.0788 | −23.31 | 2.43 × 10−2 | 73 | 94 |
hsa-miR-29c | 17.9651 | −17.7 | 7.70 × 10−3 | 224 | 244 |
hsa-miR-29a | 17.9651 | −17.64 | 7.41 × 10−3 | 224 | 244 |
hsa-miR-342-5p | 17.9463 | −20.89 | 8.91 × 10−3 | 205 | 225 |
hsa-miR-30c-2 | 17.624 | −17.22 | 1.91 × 10−2 | 73 | 94 |
hsa-miR-30c-1 | 17.624 | −18.77 | 2.22 × 10−2 | 73 | 94 |
hsa-miR-29b | 17.4222 | −16.53 | 1.37 × 10−2 | 223 | 244 |
hsa-miR-21 | 17.3748 | −14.3 | 1.06 × 10−2 | 223 | 244 |
hsa-miR-801 | 17.3388 | −26.53 | 7.57 × 10−3 | 96 | 119 |
hsa-miR-452 | 17.2829 | −13.26 | 1.75 × 10−2 | 236 | 257 |
hsa-miR-369-5p | 17.2829 | −17.61 | 2.56 × 10−3 | 212 | 233 |
hsa-miR-135a | 17.196 | −11.51 | 2.24 × 10−2 | 1 | 11 |
hsa-miR-330-5p | 17.1692 | −19.06 | 4.48 × 10−2 | 195 | 217 |
microRNAs predicted to interact with the 3′ UTR of each NFATc2 transcript. The Sanger microRNA database was queried for the NFATc2 transcript as described. (Last accessed July 15, 2008.) Table reflects all miRNAs scoring higher than 17.0.