Table 1.
Description of the datasets used in this study
| Dataset 1 | Dataset 2 | |
|---|---|---|
| References | Zhang et al., 2006a, b | Mukhopadhyay et al., 2006 |
| Conditions | Formate–Log (FL), Formate–Stationary (FS), Lactate–Log (LL), Lactate–Stationary (LS) | Control Time 0 h (CT0); Control Time 120 h (CT120); and Stressed NaCl Time 120 h (ST120) |
| Number of Variables | 70 | 70 |
| Number of genes analyzed | 456 (FL), 477 (FS), 440 (LL) and 462 (LS) | 2146 for all conditions |
| Number of replicates (mRNA abundance) | 4/gene | 3/gene except for ST120: 2/genes |
| Number of replicates (protein abundance) | 3/gene | 2/gene |
| Number of genes removed using a threshold t | 42 (FL), 477a (FS), 59 (LL) and 28 (LS) | 42 (CT0), 26 (CT120) and 19 (ST120) |
aThe condition FS was eliminated from further study based on biological knowledge provided by the experts. More details on Section 2.