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. 2009 Jul 16;3(Suppl 4):S10. doi: 10.1186/1753-6561-3-S4-S10

Table 1.

Top 5 GO terms in contrast MM8-PM8 identified by Globaltest

GO term ID GO term description Number of genes in GO terma Number of genes affectedb p-value FDR adjusted p-valuec
Biological Process
GO:0051017 actin filament bundle formation 6 2 0.002 0.047
GO:0006996 organelle organization and biogenesis 3 2 0.002 0.047
GO:0015816 glycine transport 2 1 0.003 0.047
GO:0016042 lipid catabolic process 7 6 0.003 0.047
GO:0009113 purine base biosynthetic proces 4 2 0.003 0.047
Molecular function
GO:0019976 interleukin-2 binding 2 2 0.002 0.040
GO:0015187 glycine transmembrane transporter activity 2 1 0.003 0.040
GO:0031013 troponin I binding 2 1 0.003 0.040
GO:0003847 1-alkyl-2-acetylglycerophosphocholine.... 2 2 0.003 0.040
GO:0004438 phosphatidylinositol-3-phosphatase activity 2 2 0.003 0.040
Cellular component
GO:0001726 ruffle 18 9 0.003 0.034
GO:0005719 nuclear euchromatin 2 1 0.003 0.034
GO:0005884 actin filament 12 6 0.003 0.034
GO:0000307 cyclin-dependent protein kinase... 5 3 0.004 0.034
GO:0016529 sarcoplasmic reticulum 4 3 0.004 0.034

a Number of genes within each GO term.

b Genes differentially expressed with z-score > 2.0

c The p-values were adjusted for multiple hypotheses testing with Benjamini and Hochberg to control the false discovery rate (FDR).