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. 2009 May 12;11(3):R65. doi: 10.1186/ar2693

Table 1.

Sequences of primers and probes used in quantitative real-time polymerase chain reaction analysis

Target Forward primer Reverse primer Probe Accession number
GAPDH GCTGAACGGGAAGCTCACT AGGTCAGGTCCACCACTGA CCCCACTGCCAACGTG [GenBank: NM_002046]
Aggrecan CCGTGTGTCCAAGGAGAAGG GGGTAGTTGGGCAGTGAGAC CTGATAGGCACTGTTGAC [GenBank: NM_001135]
Collagen type I AGAACAGCGTGGCCTACATG GCGCGGATCTCGATCTCG CAGCAGACTGGCAAC [GenBank: NM_000088]
Collagen type II ATGGAGACTGGCGAGACTTG GCTGCTCCACCAGTTCTTCTT CCCAATCCAGCAAACG [GenBank: NM_001844]
SOX9 GACTTCCGCGACGTGGAC GTTGGGCGGCAGGTACTG CGACGTCATCTCCAACAT [GenBank: NM_000346]
IL-1α AAGAGGGAAGTTTGCTTGATTAAGG GAGGATCAAGACTTCTTTGTGCTC ACCACTGTTCTCTTCTCTACCCTGCCC [GenBank: NM_000575]
IL-1β CGGCCACATTTGGTTCTAAGA AGGGAAGCGGTTGCTCATC ACCCTCTGTCATTCG [GenBank: NM_000576]
IL-1 receptor I ATTTCTGGCTTCTAGTCTGGT AACGTGCCAGTGTGGAGTGA ACTTGATTTCAGGTCAATAACGGTCCCC [GenBank: NM_000877]
IL-1 receptor antagonist CCTGCAGGGCCAAGCA GCACCCAACATATACAGCATTCA AGCCTCGCTCTTGGCAGGTACTCAGT [GenBank: NM_173841]
TNF-α CGAACATCCAACCTTCCCAAAC TGGTGGTCTTGTTGCTTAAAGTTC CCAATCCCTTTATTACCC [GenBank: NM_000594]
TNF receptor 1 AATTCTGGCTTCTAGTCTGGT AACGTGCCAGTGTGGAGTGA TTCAGTCCCACTCCAGGCTTCACCC [GenBank: NM_001065]
TNF receptor 2 PDAR PDAR PDAR
MMP-3 TGAAGAGTCTTCCAATCCTACTGTTG CTAGATATTTCTGAACAAGGTTCATGC TTTGCTCAGCCTATCCAT [GenBank: NM_002422]
MMP-9 CCCGGAGTGAGTTGAACCA CAGGACGGGAGCCCTAGTC TACGTGACCTATGACATC [GenBank: NM_004994]
MMP-13 CCCCAGGCATCACCATTCAAG GACAAATCATCTTCATCACCACCAC CTGCCTTCCTCTTC [GenBank: NM_002427]

GAPDH, glyceraldehyde-3-phosphate dehydrogenase; IL-1, interleukin-1; MMP, matrix metalloproteinase; PDAR, pre-designed assay; TNF, tumour necrosis factor.