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. 2009 Jul 31;4(7):e6474. doi: 10.1371/journal.pone.0006474

Table 4. Comparisons between fold-change in gene expression determined by microarray and qRT-PCR methods.

MICROARRAY qPCR
Gene DM DM+SERCA DM DM+SERCA
Akt1 0.87 1.43 0.29 0.74
Akt2 1.02 2.1 0.19 0.77
PI3Ka 1.01 1.41 1.30 3.16
GSK-3b 1.08 0.68 1.10 0.76
PKC-λ 1.01 1.65 0.88 1.68
GLUT1 0.94 0.68 1.27 0.61
GLUT4 1.30 1.72 0.21 0.91
CK 0.88 1.41 0.59 2.14
Serca2a 0.79 1.08 0.48 2.21
S100A3 1.80 0.68 2.63 1.15
CaBP1 1.13 0.12 1.96 0.98
RyR2 11.4 0.05 1.19 0.94
Cacna1c 1.05 1.55 0.60 1.12
Cacnb3 0.29 0.62 N/A N/A
MMP7 1.63 0.13 7.08 0.65
FZD4 2.32 0.43 1.50 0.99
FGF4 0.24 0.62 N/A N/A
sFRP4 0.26 0.78 1.64 2.94
Retnla 54.03 0.27 23.8 0.95

The fold changes in mRNA levels in diabetes (DM) and DM+SERCA2a samples of selected genes were determined by microarray and RT-qPCR. Transcripts were selected based on their roles in insulin signaling, energy/metabolism, Ca2+ handling, structural remodeling and intracellular signaling. CK, creatine kinase; sFRP4, secreted frizzled-related protein 4; Retnla, resistin-like alpha; Cacna1c, calcium channel, voltage-dependent, L type, alpha 1C subunit; Cacnb3, calcium channel, voltage-dependent, beta 3 subunit. N/A, not amplified.