Table 2.

List of identified common motifs

Virus	Length (nt)	Number of bonds	Frequency	Predictions per code (E, R, N)	Motif
NoV	24	7	0.86	7, 7, 4	(((((((::::::::::)))))))
BBV	15	10	0.83	5, 6, 4	(((((::::)))))
BBV	16	10	0.63	5, 5, 5	(((((::::::)))))
BoV	16	6	1.00	9, 9, 9	((((((::::))))))
BoV	17	5	0.67	5, 1, 7	[[[[[:::::::]]]]]
BoV	56	9	0.56	3, 0, 2	((((:::::))))::::::::::::::::::::::::::[[[[[:::::::]]]]]
BoV	34	11	0.39	4, 0, 3	[[[[[:::::::]]]]]:((((((::::))))))
FHV	14	10	0.78	6, 6, 2	(((((::::)))))
FHV	12	8	0.67	7, 5, 4	((((::::))))
FHV	56	11	0.42	2, 3, 0	[[[[[[:::::::::(((((::::))))):::::::::::::::::::::]]]]]]
FHV	64	9	0.42	2, 3, 0	(((:::::[[[[[[))):::::::::::::::::::::::::::::::::::::::::]]]]]]
FHV	56	6	0.42	2, 3, 0	[[[[[[::::::::::::::::::::::::::::::::::::::::::::]]]]]]
BoV	24	9	0.39	4, 0, 3	((((:::[[[[[)))):::]]]]]
PaV	18	10	0.67	5, 4, 1	((((::::::::))))
PaV	30	7	0.39	4, 1, 2	[[[[:::::::::::]]]]:(((::::)))
PaV	19	4	0.39	4, 1, 2	[[[[:::::::::::]]]]
PaV	26	8	0.33	4, 1, 1	((((:::[[[[:))))::::::]]]]
GGNNV	24	10	0.56	4, 5, 1	(((((:[[[[[))))):::]]]]]
GGNNV	22	5	0.54	8, 4, 1	(((((::::::::::::)))))
GGNNV	41	10	0.50	4, 4, 1	[[[[[::::::::]]]]]:(((((::::::::::::)))))
GGNNV	18	5	0.48	4, 5, 1	[[[[[::::::::]]]]]
SJNNV	21	6	0.83	2, 2, 1	(((:::(((::::)))::)))
SJNNV	42	11	0.50	6, 3, 0	[[[[[::::::::]]]]]((((((::::::::::::))))))
SJNNV	24	10	0.50	6, 3, 0	(((((:[[[[[))))):::]]]]]
SJNNV	24	6	0.43	6, 3, 0	((((((::::::::::::))))))
SJNNV	18	5	0.43	6, 3, 0	[[[[[::::::::]]]]]