Table 1. Statistics for the crystallographic data collection and refinement of the Cx26 gap junction channel.
Crystal | Native I | Ta6Br14 derivative of native I | Native II | Ta6Br14 derivative of native II | SeMet derivative (edge) | SeMet derivative (remote) | Ta6Br14 derivative for MAD (peak) | Ta6Br14 derivative for MAD (edge) | Ta6Br14 derivative for MAD (remote) | S anomalous (high energy) | S anomalous (low energy) |
---|---|---|---|---|---|---|---|---|---|---|---|
Initial phase for multi-crystal averaging (phasing) | Native I (SIRAS) | Native II (SIR) | SeMet derivative (MAD) | Ta6Br14 derivative for MAD (MAD) | |||||||
Data-collection statistics | |||||||||||
No. of crystals | 10 | 2 | 2 | 4 | 1† | 1† | 2 | 1† | 1† | 1 | 2 |
Space group | C2 | C2 | C2 | C2 | C2 | C2 | C2 | C2 | C2 | C2 | C2 |
Unit-cell parameters | |||||||||||
a (Å) | 167.6 | 167.3 | 170.7 | 168.7 | 170.7 | 171.0 | 169.0 | 168.7 | 170.7 | 166.7 | 166.7 |
b (Å) | 111.2 | 110.6 | 111.6 | 111.6 | 115.5 | 115.0 | 110.9 | 111.6 | 111.6 | 110.1 | 110.1 |
c (Å) | 155.4 | 154.2 | 157.2 | 156.2 | 157.6 | 157.5 | 156.5 | 156.2 | 157.2 | 155.7 | 155.7 |
β (°) | 114.0 | 114.3 | 114.0 | 113.4 | 113.7 | 113.8 | 114.4 | 113.4 | 114.0 | 114.4 | 114.4 |
s.d./unit-cell parameter‡ (%) | 0.56 | 0.36 | |||||||||
Wavelength (Å) | 0.9000 | 1.2526 | 0.9000 | 0.9000 | 0.9790 | 0.9000 | 1.2526 | 0.9000 | 0.9000 | 0.9850 | 1.7000 |
Resolution (Å) | 200–3.50 (3.63–3.50) | 200–6.00 (6.21–6.00) | 200–4.00 (4.14–4.00) | 200–7.00 (4.14–4.00) | 200–4.00 (4.14–4.00) | 200–4.00 (4.14–4.00) | 200–4.00 (4.14–4.00) | 200–4.00 (4.14–4.00) | 200–4.00 (4.14–4.00) | 200–3.50 (4.00–3.50) | 200–4.00 (4.50–4.00) |
Observed reflections | 348035 (18261) | 41085 (3433) | 92816 (6526) | 33075 (3326) | 63815 (5358) | 61306 (4766) | 139511 (8088) | 60030 (4130) | 64219 (5005) | 109122 (36329) | 565283 (162661) |
Independent reflections | 31138 (3095) | 6372 (613) | 22327 (2105) | 3964 (396) | 21392 (2061) | 21088 (1986) | 21177 (1881) | 20602 (1796) | 21088 (2002) | 31778 (10407) | 42471 (12574) |
I/σ(I) | 26.1 (3.1) | 35.4 (6.2) | 15.3 (1.0) | 38.8 (14.2) | 13.1 (1.3) | 12.9 (1.3) | 20.2 (0.74) | 14.0 (0.65) | 9.3 (0.59) | 7.51 (0.56) | 13.53 (1.85) |
Averaged redundancy | 11.2 (5.9) | 6.4 (4.5) | 4.2 (3.1) | 8.4 (8.4) | 3.0 (2.6) | 2.9 (2.4) | 6.6 (4.3) | 2.9 (2.3) | 3.0 (2.5) | 3.4 (3.4) | 13.3 (12.9) |
Completeness (%) | 94.1 (94.9) | 97.1 (94.5) | 90.3 (95.1) | 91.6 (93.2) | 93.1 (90.4) | 91.3 (86.4) | 96.7 (87.6) | 99.1 (98.4) | 96.4 (92.3) | 97.4 (97.1) | 99.6 (99.2) |
Rmerge§ (%) | 8.5 (37.8) | 5.2 (16.8) | 9.4 (70.8) | 5.9 (13.1) | 8.6 (68.5) | 7.0 (58.3) | 9.4 (>100) | 9.2 (93.2) | 11.0 (>100) | 10.6 (>100) | 14.4 (>100) |
Refinement statistics | |||||||||||
Rwork¶/Rfree | 0.337/0.351 | ||||||||||
No. of atoms | 29595 | ||||||||||
B factors (Å2) | 137.2 | ||||||||||
R.m.s. deviations | |||||||||||
Bond length (Å) | 0.012 | ||||||||||
Bond angle (°) | 1.352 | ||||||||||
Ramachandran plot (%) | |||||||||||
Favoured region | 82.1 | ||||||||||
Allowed region | 16.8 | ||||||||||
Generously allowed region | 1.0 | ||||||||||
Disallowed region | 0.0 |
Edge data and remote data were collected from the same crystal.
The average of standard deviation/unit-cell parameter was calculated.
R merge = , where I i(hkl) is the intensity of the reflection and 〈I(hkl)〉 is the mean intensity of a group of equivalent reflections.
R work = , where F o and F c are the measured and calculated structure factors, respectively.