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. 2009 Jun 5;191(15):4854–4862. doi: 10.1128/JB.01272-08

TABLE 1.

Summary of genome sizes, gene contents, gene diversities, and proteome contents for S. pneumoniae prophages

Prophage Host strain (serotype) Accession no.a MLSTb Genome size (bp) % GC content attc Predicted genes % Coding No. of genes with unknown function
φSpn_OXC OXC141d (3) SI 180 33,276 40.5 OXC 51 92.7 31
φSpn_3 CGSSp3BS71e (3) NZ_AAZZ01000016 180 33,069 40.2 OXC 51 91.7 31
φSpn_11 CGSSp11BS70e (11) NZ_ABAC01000015 62 31,071 40.5 OXC 53 94.7 38
φSpn_14 CGSSp14BS69e (14) NZ_ABAD01000021 124 31,674 38.9 OXC 56f 93.7 35
φSpn_H_1 Hungary19A-6 (19A) CP000936 199 33,996 39.33 OXC 42 93.8 21
φSpn_1873 CDC1873-00 (6A) NZ_ABFS01000005 376 34,448 39.29 OXC 42 96.5 19
φSpn_3059 CDC3059-06 (19A) NZ_ABGG01000014 199 37,893 40.61 OXC 58 96.6 37
φSpn_195_2 SP195 (9V) NZ_ABGE01000013 156 38,455 40.84 OXC 49 92.4 28
φSpn_6 CGSSp6BS73e (6A) NZ_ABAA01000017 460 42,069 40.1 MM1 62f 91.2 43
φSpn_9 CGSSp9BS68e (9V) ABAB00000000 1269 40,692 39.8 MM1 59 87.7 41
φSpn_19 CGSSp19BS75e (19F) ABAF00000000 485 39,477 39.8 MM1 58 89.9 41
φSpn_23 CGSSp23BS72e (23F) ABAG00000000 37 39,387 39.7 MM1 66f 89.7 50
φSpn_195_1 SP195 (9V) NZ_ABGE01000002 156 41,058 39.92 MM1 59 88.1 41
φSpn_18 CGSSp18BS74e (6B) ABAE00000000 ND 37,362 38.2 φSpn_18 53 93.3 29
φSpn_H_2 Hungary19A-6 (19A) CP00936 199 40,079 39.4 φSpn_18 52 96.1 25
MM1g 949 (23F) AJ302074 81 40,248 38.4 MM1 53 94.3 26
MM1-1998g DCC1808 (24) DQ113772
MM1-2008 23Fh (23F) SI 81 39,307 38.2 MM1 53 94.7 26
a

SI, obtained from the Sanger Institute website (http://www.sanger.ac.uk/Projects/S_pneumoniae/).

b

MLST, multilocus sequence type; ND, not determined.

c

att, attachment core sequence; OXC, attOXC (SP_0019-SP_0020); MM1, attMM1 (SP_1563-SP_1564); φSpn_18, attφSpn_18 (SP_0020-SP_0021).

d

Provided by A. Brueggemann (University of Oxford, United Kingdom).

e

Provided by Allegheny General Hospital, Allegheny-Singer Research Institute, Center for Genomic Sciences, Pittsburgh, PA (30).

f

Calculation of the gene number may vary due to the annotation of the pblB gene.

g

The data for MM1 and MM1-1998 have been previously reported (50).

h

Provided by the Scottish Meningococcus and Pneumococcus Reference Laboratory (Stobhill Hospital, Glasgow, United Kingdom).