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. Author manuscript; available in PMC: 2009 Jul 27.
Published in final edited form as: J Am Chem Soc. 2009 Feb 18;131(6):2208–2213. doi: 10.1021/ja807526v

Table 1.

Synthetic DNA Template and Primers Used in LDR-SERS Experiments

template/primer sequence for LDR (5′ 3′)
WT K-Ras template TCC ACA AAA TGA TTC TGA ATT AGC TGT ATC GTC AAG
GCA CTC TTG CCT ACG CCA CCA GCT CCA ACT ACC ACA AGT
TTA TAT TCA GTC ATC
MT K-Ras template TCC ACA AAA TGA TTC TGA ATT AGC TGT ATC GTC AAG
GCA CTC TTG CCT ACG CCA TCA GCT CCA ACT ACC ACA AGT
TTA TAT TCA GTC ATC
common LDR primer 5Phosa/TGG CG/AmTb/ AGG CAA GAG TGC CTT GAC
mutant LDR primer GAA TAT AAA CTT GTG GTA G/FlurTc/T GGA GCT GA
a

5Phos denotes a 5′ phosphorylation.

b

AmT denotes an aminated thymine.

c

FlurT denotes a fluorescein dT.

The italicized bases of the template sequences are the complementary nucleotides to both primers. The 3′ base in mutant LDR primer (bold) allows for specific discrimination of the two templates.