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. Author manuscript; available in PMC: 2010 Apr 21.
Published in final edited form as: Vaccine. 2009 Mar 3;27(18):2426–2436. doi: 10.1016/j.vaccine.2009.02.073

Table 2. Oligonucleotides used in this study.

Name Oligonucleotide Sequences (5′ → 3′) Combined primers and product size (bp)
Upstream guaA region
GuaA5for CCC GGA TCC ATC TTT AGA GAT AAG TTT TCA CAT ATT GAG GuaA5for-GuaA5rev (500)
GuaA5rev GAT GAT ATC TTT TTA TAA AAA TAA ACA TTT TCT TAA AAG GTT ATT T
Downstream guaA region
GuaA3for GAT GAT ATC GCT ATG TCA AAA TAT ACT ATT TTA GAT AAA ATA A GuaA3for-GuaA3rev (500)
GuaA3rev CCC GTC GAC GCG GCC GCA GAT CTA TAC CGC CAG CAT GAT TTA AGG CTT CA
Upstream guaB region
GuaB5for CCC GGA TCC TAA ATA TAA GCC TAA GGC AGT GAT TGA TTT GuaB5for-GuaB5rev (500)
GuaB5rev GAT CCC CGA ATT CCT GCA GCC CGG GTT TTT GAT CTC CGT AAT TAA AAT CTA AAG AGT
Downstream guaB region
GuaB3for CCC GAA TTC CTG CAG AAC CTC TTA ATT ATG ATT TTA ATA AGT TAT AAT GuaB3for-GuaB3rev (500)
GuaB3rev CCC GTC GAC GCG GCC GCA ACA ACA CCG CTT ACA GCA AAC TTT TTA
Km resistance cassette (aphT)
AphTfor ATG CCC GGG GAA GTT CCT ATA CTT TCT AGA GAA TAG AphTfor-AphTrev (1438)
AphTrev ATG CCC GGG AGT TCC TAT TCC GAA GTT CCT ATT CT
GroEL promoter (PgroEL)
GroELfor GAA TTC CGG ATC CTT TCT TGA AAA TTT TTT TTT TGA CTC AAT AT GroELfor-GroELrev (132)
GroELrev GAA TTC CCC CGG GCA TAT GAA TCT TAC TCC TTT GTT AAA TTA
Genotypic identification of LVS guaA mutant
OLIGA1 GGA TAA AAT AAC CTT TTA AGA AAA TGT TT OLIGA1-OLIGA2 (565)
OLIGA2 GTT TCT GGG TGA AAC TGC ACA CC OLIGA1-OLIGkm (855)
Genotypic identification of LVS guaB mutant
OLIGB1 ACT CTT TAG ATT TTA ATT ACG GAG ATC OLIGB1-OLIGB2 (550)
OLIGB2 TCT TTT TAA TCG CTC CTT GAG AAG C OLIGB1-OLIGkm (840)
aphT oligonucleotide
OLIGkm ATG CAG CCG CCG CAT TGC ATC A
Trans complementation of guaA gene

CompA1 AGC TAG CTC CCG GGA TGA CAG ATA TAC ATA ATC ATA AGA TTT TGA TT CompA1-CompA2 (1550)

CompA2 AGC TAG CTG ATA TCG TCG ACT TAT TCC CAT TCA ATT GTT CCA GGT GGT T
Trans complementation of guaB gene
CompB1 GGG ACT AGT CTA GAG CGA AAT AGT AAA TTC TAA TAC TTA TTT C CompB1-ComB2 (1570)
CompB2 GGG ACT AGT CTA GAT TAA GAC TGG TAA TTA GG TGG TTC TTT AG