Table 5.

Comparison of gene expression changes for control and HCD-fed mice as determined by quantitative RT-PCR and cDNA microarray

Gene code	Applied Biosystems assay identification	Gene name	Change in expression
			Microarray	Q-RT-PCR
AK003441.1	Mm00614943_m1	Ankyrin repeat and KH Domain containing 1
AW489168	Mm00519268_m1	Bcl-2 binding component 3
AF065933.1	Mm00441242_m1	Chemokine (C-C motif) ligand 2	10.2↓	2.7↓
NM_009998.1	Mm00456591_m1	Cytochrome P450, family 2, subfamily b, poly-peptide 10	20.0↓	ND*
NM_010062.1	Mm00438463_m1	Deoxyribonuclease II alpha	3.4↓	2.1↓
NM_018808.1	Mm00444519._m1	DnaJ (HSP40) Homolog, subfamily b, member 1	3.7↓	5.8↓
NM_007945	Mm00514752_m1	Eps8 (Epidermal growth factor receptor pathway substrate 8)	2.0↓	1.8↓
NM_008182	Mm00833353_m1	Glutathione S-transferase α 2	8.3↓	12.5↓
U72881.1	Mm00803317_m1	Regulator of G protein signaling 16
NM_008898.1	Mm00435876_m1	P450 Cytochrome oxidoreductase	26.0↓	ND*

* ND, not detected. The relative expression for Q-RT-PCR was normalized to the 18S rRNA copy level. Arrows indicate the direction of change