Table 3.
SSR | |||||||||
Map location | Total sample N = 107 |
Wild sample N = 61 |
|||||||
Locus | LG1 | Na | HO | HE | PIC | Na | HO | HE | PIC |
M257 | B | 6 | 0.25 | 0.55 | 0.47 | 6 | 0.21 | 0.59 | 0.52 |
M809 | H | 5 | 0.15 | 0.25 | 0.23 | 4 | 0.11 | 0.16 | 0.15 |
M804 | M | 3 | 0.06 | 0.07 | 0.07 | 1 | 0.00 | 0.00 | 0.00 |
M821 | F | 13 | 0.28 | 0.83 | 0.81 | 13 | 0.28 | 0.83 | 0.81 |
M314 | G | 5 | 0.25 | 0.49 | 0.43 | 5 | 0.18 | 0.42 | 0.36 |
M368 | - | 20 | 0.81 | 0.93 | 0.92 | 15 | 0.76 | 0.91 | 0.91 |
M764 | - | 13 | 0.65 | 0.83 | 0.81 | 11 | 0.63 | 0.82 | 0.80 |
M394 | C | 9 | 0.41 | 0.80 | 0.77 | 8 | 0.39 | 0.75 | 0.71 |
M779 | - | 12 | 0.75 | 0.85 | 0.83 | 12 | 0.63 | 0.82 | 0.80 |
M782 | - | 4 | 0.06 | 0.25 | 0.22 | 4 | 0.03 | 0.12 | 0.11 |
M495 | - | 9 | 0.35 | 0.65 | 0.60 | 9 | 0.33 | 0.62 | 0.57 |
M259 | N | 6 | 0.52 | 0.59 | 0.55 | 6 | 0.48 | 0.60 | 0.56 |
M367 | - | 15 | 0.30 | 0.88 | 0.87 | 12 | 0.20 | 0.85 | 0.83 |
M755 | - | 13 | 0.42 | 0.78 | 0.76 | 11 | 0.23 | 0.68 | 0.65 |
M387 | J | 10 | 0.33 | 0.75 | 0.71 | 8 | 0.26 | 0.74 | 0.70 |
M856 | I | 11 | 0.49 | 0.88 | 0.87 | 11 | 0.41 | 0.85 | 0.84 |
Total | 154 | 136 | |||||||
Mean | 9.63 | 0.38 | 0.65 | 0.62 | 8.5 | 0.32 | 0.61 | 0.58 | |
RFLP | |||||||||
N = 107 | N = 61 | ||||||||
Locus | LG2 | Na | HO | HE | PIC | Na | HO | HE | PIC |
gA13 | 10 | 14 | 0.51 | 0.73 | 0.70 | 11 | 0.43 | 0.66 | 0.61 |
gA19 | 9 | 10 | 0.43 | 0.78 | 0.75 | 9 | 0.38 | 0.72 | 0.68 |
gA29 | 5 | 5 | 0.27 | 0.47 | 0.44 | 5 | 0.26 | 0.50 | 0.47 |
gA10 | 3 | 8 | 0.48 | 0.78 | 0.76 | 7 | 0.42 | 0.77 | 0.74 |
gA14 | 3 | 5 | 0.30 | 0.59 | 0.53 | 5 | 0.31 | 0.56 | 0.52 |
gA61 | 7 | 8 | 0.50 | 0.70 | 0.66 | 6 | 0.48 | 0.69 | 0.65 |
cR167 | 4 | 7 | 0.43 | 0.60 | 0.57 | 7 | 0.34 | 0.58 | 0.55 |
gA72 | 7 | 2 | 0.16 | 0.41 | 0.33 | 2 | 0.13 | 0.34 | 0.28 |
Total | 59 | 52 | |||||||
Mean | 7.37 | 0.38 | 0.63 | 0.59 | 6.50 | 0.34 | 0.60 | 0.56 |
Linkage group locations for mapped markers are given. The number of alleles (Na), observed heterozygosity (HO), expected heterozygosity (HE, or gene diversity) and PIC (polymorphism information content) values are also given.
1 Linkage group of (C. canephora × C. heterocalyx) × C. canephora genetic map from Coulibaly et al. [60]
2 Linkage group of C. canephora genetic map from Paillard et al. [59], with estimated distances: gA10-gA14 = 21 cM, gA61-gA72 = 30 cM