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. 2009 Aug 6;4(8):e6540. doi: 10.1371/journal.pone.0006540

Table 1. SNPs investigated in this study together with the PCR primers and detection method.

Gene Chrom. SNP NCBI A.N° AA substitution Base change Detection method PCR primers AT FS (bp) DFS (bp)
MTHFR 1 c.203G>A rs2066472 p.R68Q A/G PCR+TaqI dig 5′CGA TTG GAA TCT GGT GAC AA3′ 5′ACC TTG CAT GAG TTT ACC TTG3′ 56°C 101 48+53
c.665C>T rs1801133 p.A222V C/T PCR+HinfI dig 5′CCA AAG GCC ACC CCG AAG3′ 5′GAA AGA TCC CGG GGA CGA TG3′ 56°C 180 75+105
c.1286A>C rs1801131 p.E429A A/C PCR+MboII dig 5′CTT TGG GGA GCT GAA GGA CTA CTA C3′ 5′CAC TTT GTG ACC ATT CCG GTT TG3′ 56°C 163 56+31+30+28+18
MTRR 5 c.66A>G rs1801394 p.I22M A/G PCR+NdeI dig 5′GCA AAG GCC ATC GCA GAA GAC3′ 5′TGG TGG TAT TAG TGT CCT TTT3′ 56°C 179 22+157
c.524C>T rs1532268 p.S175L C/T PCR+TaqI dig 5′CGT GGA TTG CTG GAC TCT G3′ 5′AGC AGC TCT GAC TTC ACA AGG3′ 56°C 133 101+32
CBS 21 c.919G>A - p.G307S A/G PCR+PvuII dig 5′ATC ATT GGG GTG GAT CCCGA 3′ 5′ACC GTG GGG ATG AAG TCG CAG3′ 60°C 113 92+21

Chrom: Chromosome.

SNP: single nucleotide polymorphism.

NCBI AN: NCBI Accession Number.

AA: Amino Acid.

Dig: Digestion.

AT: Annealing Temperature.

FS: Fragment size.

DFS: Digestion Fragment size.