Table 1.

Probe sets with ANOVA-based experiment-wide p-values for genotype effect ≤0.05 and fold change ≥1.25 at both E15.5 and E17.5

Probe ID	Gene	ANOVA F(genotype)	p-value	change E15 & E17	F x fold-change
Decreased expression
X61397_s_at	Cals1	157.378	0.0000	4.25	668.86
M21532_s_at	Pcp2	116.929	0.0000	2.00	233.86
M21531_s_at	Calb1	73.531	0.0000	2.25	165.44
U44725_s_at	Kitl	48.147	0.0000	3.00	144.44
D83262_at	Slc1a6 (EAAT4)	18.462	0.0015	3.25	60.00
AA415606_at	Baf53a	43.954	0.0000	1.25	54.94
X17320_s_at	Pcp4	33.003	0.0002	1.25	41.25
AF026489_at	Spnb3	29.314	0.0003	1.25	36.64
	ESTs, Weakly similar to retinoblastoma-associated protein
AA267955_s_at	HEC	25.684	0.0005	1.25	32.10
Msa.1693.0_s_at	Idb2	20.554	0.0011	1.50	30.83
AA426917_s_at	Ccnb1-rs1	22.250	0.0008	1.25	27.81
X56044_s_at	Htf9c	5.674	0.0385	4.50	25.53
Msa.17592.0_s_at	pigpen protein	19.534	0.0013	1.25	24.42
Z26580_s_at	Ccna2	16.353	0.0024	1.25	20.44
AA408677_rc_s_at	Txnrd1	14.784	0.0032	1.25	18.48
Z30940_f_at	Hist2	12.012	0.0061	1.50	18.02
Msa.1076.0_at	Pim1	13.469	0.0043	1.25	16.84
X03919_s_at	Nmyc1	10.722	0.0084	1.50	16.08
Msa.38014.0_s_at	Myh10	7.948	0.0182	1.75	13.91
D78354_at	Plscr1	8.952	0.0135	1.50	13.43
V00830_f_at	Krt1-10	8.721	0.0145	1.50	13.08
V00755_s_at	Timp	8.657	0.0147	1.50	12.99
Msa.31660.0_s_at	Cd53	8.149	0.0171	1.50	12.22
Msa.2058.0_s_at	Rora	9.772	0.0108	1.25	12.21
Msa.18074.0_f_at	Zfp216	6.892	0.0254	1.75	12.06
Msa.29968.0_s_at	Mm.27526, arginyl-tRNA synthetase	7.575	0.0204	1.50	11.36
Msa.1847.0_f_at	Rpl10a	8.785	0.0142	1.25	10.98
Msa.16618.0_s_at	Sfrs3	8.264	0.0165	1.25	10.33
AA450768_s_at	Mm.200828, ESTs	6.845	0.0258	1.50	10.27
Msa.54.0_f_at	Mela	5.042	0.0486	2.00	10.08
U95610_s_at	Nek2	7.627	0.0200	1.25	9.53
Msa.19334.0_f_at	Clic1	5.884	0.0357	1.50	8.83
X60304_at	Pkcd	6.485	0.0290	1.25	8.11
AA104750_at	Trfp	5.616	0.0393	1.25	7.02
U96746_s_at	Prdx4	4.990	0.0495	1.25	6.24
Increased expression
X51468_f_at	Smst	58.140	0.0000	1.25	72.68