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. 2000 Nov 14;97(24):13075–13079. doi: 10.1073/pnas.240455797

Table 1.

Summary of computations at 25°C

Peptide sequence No. of generated conformations* No. of accepted conformations Lowest energy, Kcal/mol Helical fraction θcoupling, % Helical fraction θdihedral, % Dielectric constant ɛ
ALA16 43,752 1,345 −255.8 7 (6) 12 (6) 80
ALA16 42,256 1,222 −215.7 59 68 40
ALA16 49,151 1,416 −79.8 90 100 2
ALA10 50,824 1,645 −181.6 0 (0) 10 (0) 80
ALA10 34,105 1,626 −154.0 54 71 40
ALA10 45,357 1,739 −49.5 90 100 2
9A1K§ 38,482 1,649 −176.5 77 76 80
9A1Q 39,381 1,689 −252.5 31 50 80
*

These values correspond to the number of generated conformations for the runs using the procedure described in refs 11 and 12

Theoretical estimates obtained by using the experimental value of the Zimm-Bragg parameters (2), as derived from Host-Guest experiments (3), i.e., σ = 8 × 10−4 and s = 1.06 at 25°C. 

Experimental value obtained by using the tri-block copolymer technique for the thermally induced helix-coil transition for copolymers of the type (d,l-lysine)m-(l-alanine)n-(d,l-lysine)m, with n = 10 for the alanyl residues in the central block (1). 

§

Values in this row were computed at pH 6, with a value of 10.5 adopted for pKa0 for the lysine residue (14).