Table 1.
Peptide sequence | No. of generated conformations* | No. of accepted conformations | Lowest energy, Kcal/mol | Helical fraction θcoupling, % | Helical fraction θdihedral, % | Dielectric constant ɛ |
---|---|---|---|---|---|---|
ALA16 | 43,752 | 1,345 | −255.8 | 7 (6†) | 12 (6†) | 80 |
ALA16 | 42,256 | 1,222 | −215.7 | 59 | 68 | 40 |
ALA16 | 49,151 | 1,416 | −79.8 | 90 | 100 | 2 |
ALA10 | 50,824 | 1,645 | −181.6 | 0 (0‡) | 10 (0‡) | 80 |
ALA10 | 34,105 | 1,626 | −154.0 | 54 | 71 | 40 |
ALA10 | 45,357 | 1,739 | −49.5 | 90 | 100 | 2 |
9A1K§ | 38,482 | 1,649 | −176.5 | 77 | 76 | 80 |
9A1Q | 39,381 | 1,689 | −252.5 | 31 | 50 | 80 |
These values correspond to the number of generated conformations for the runs using the procedure described in refs 11 and 12.
Theoretical estimates obtained by using the experimental value of the Zimm-Bragg parameters (2), as derived from Host-Guest experiments (3), i.e., σ = 8 × 10−4 and s = 1.06 at 25°C.
Experimental value obtained by using the tri-block copolymer technique for the thermally induced helix-coil transition for copolymers of the type (d,l-lysine)m-(l-alanine)n-(d,l-lysine)m, with n = 10 for the alanyl residues in the central block (1).
Values in this row were computed at pH 6, with a value of 10.5 adopted for pKa0 for the lysine residue (14).