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. 2009 Apr 22;96(8):3154–3167. doi: 10.1016/j.bpj.2009.01.023

Table 1.

Model parameters

Quantity Value Comments
Potential periodicity, δ 2π/26 See (7,17).
Rotor drag coefficient, ζR 2 × 10−3 pN·nm·s/rad2 Estimated
Bead diffusion constant, DL 0.01–100 rad2/s Calculated from Stokes' Law
Stator diffusion constant, Ds 500 rad2/s Estimated
Load-rotor linkage spring constant, κ 400–500 pN·nm/rad2 Estimated from experimental measurements (49)
Saw-tooth potential height, U 10 kBT Ad hoc
Ratio of the two potential branches, Lleft/Lright 1/9
Potential bumps Height 15 kBT
Width 0.2δ
Centers 0.1δ (State1)
0.6δ (State 2)
Transition windows α1, α2 0.1δ, 0.6δ Fitting data
β1β2 0.58δ, (0.58 + 0.5)δ
Binding site pK value H+ motor pKa= 7.3 Estimated (using the middle value of external and internal concentrations)
Chimera motor pKa= 31.6 mM
Binding rate prefactors (two ions) k0 H+ motor 1.0 × 1020 s−1 Fit experimental torque-speed curve
Chimera motor 1.0 × 108 s−1 (or 6.0 × 107 s−1 with a uniform window)
E. coli BFM living condition pHperiplasm 7.0 Experimental values
pHcytoplasm 7.6
Vmembrane 120 mV
Chimera BFM living condition [Na]periplasm 85 mM
[Na]cytoplasm 12 mM
Vmembrane 140 mV