Table 3.
GO terms identified to be over-represented among the transcripts of significantly up- or down-regulated in the different stress conditions
| Condition | Change in expression | Category | Function | GO ID |
| Hyper | Down | Nucleic acid binding | RNA binding (mRNA, rRNA, snoRNA) | [GO:0003723]; [GO:0003729]; [GO:0019843]; [GO:0030515] |
| Nucleic acid binding | Translation factor activity (elongation and initiation) | [GO:0008135]; [GO:0003746]; [GO:0003743] | ||
| Lyase | UDP-glucuronate decarboxylase activity | [GO:0048040] | ||
| Ligase | CTP synthase activity | [GO:0003883] | ||
| Isomerase activity | Intramolecular oxidoreductase activity | [GO:0016860] | ||
| Up | Hydrolase | Agmatinase activity | [GO:0008783] | |
| Hydrolase | Arginase activity | [GO:0004053] | ||
| Hyper Hypo | Down | Ligase | Aminoacyl-tRNA ligase activity (inlcuding Pro, Ser, Ile, Glu) | [GO:0004812]; [GO:0016876]; [GO:0004828]; [GO:0004829]; [GO:0004822] |
| Hypo | Down | Oxidoreductase (S, peroxide) | Antioxidant activity (glutathione-disulfide reductase and catalase, cytochrome-c peroxidase) | [GO:0016209]; [GO:0004362]; [GO:0004096]; [GO:0004130] |
| Nucleic acid binding | Structure-specific DNA binding | [GO:0000404]; [GO:0032134]; [GO:0000403]; [GO:0032137]; [GO:0032138]; [GO:0032139] | ||
| Tetrapyrrole binding | Chlorophyll binding | [GO:0016168] | ||
| Lyase | Carbon-oxygen lyase activity | [GO:0016835] | ||
| Transferase (N) | Transaminase activity (including TYR, ASP, histidinol-P, aromatic amino acids) | [GO:0008483]; [GO:0004838]; [GO:0004400]; [GO:0008793]; [GO:0004069] | ||
| Transferase (C1) | Aspartate carbamoyltransferase activity | [GO:0004070] | ||
| Transferase (glycosyl) | Transferase activity, transferring pentosyl groups | [GO:0016763] | ||
| Oxidoreductase CH-CH | Biliverdin reductase activity | [GO:0004074] | ||
| Oxidoreductase (CH-NH2) | Glutamate synthase activity | [GO:0015930] | ||
| Isomerase | Isomerase activity | [GO:0016853] | ||
| Transporter | NAD(P)+ transhydrogenase (B-specific) activity | [GO:0003957] | ||
| Hypo | Down | Oxidoreductase | Oxidoreductase activity | [GO:0016491] |
| Oxi | Oxidoreductase activity, acting on NADH or NADPH | [GO:0016651]; [GO:0016652] | ||
| Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (including L-iditol 2-dehydrogenase activity) | [GO:0016616]; [GO:0016614]; [GO:0003939] | |||
| Oxi | Down | Lyase | 3-Isopropylmalate dehydratase activity | [GO:0003861] |
| Transferase (P) | Amino acid kinase activity | [GO:0019202] | ||
| Transporter | Nitrate transmembrane transporter activity | [GO:0015112] | ||
| Transferase (C1) | S-adenosylmethionine-dependent methyltransferase activity (including nicotinate phosphoribosyltransferase) | [GO:0008757] | ||
| Oxidoreductase (steroids) | Steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | [GO:0033764] | ||
| Transferase (glycosyl) | Transferase activity, transferring pentosyl groups | [GO:0016763]; [GO:0004853] | ||
| Transferase (glycosyl) | Uracil phosphoribosyltransferase activity | [GO:0004845] | ||
| Transferase (P) | Phosphoribulokinase activity | [GO:0008974] | ||
| Up | Motor activity | Microtubule motor activity | [GO:0003777] |
The table shows only pathways that were labeled significant at an FDR <10% in both sets of significant genes (5% FDR and 10% FDR).