Table 3.
Genes with more than two novel SNPs in the coding region of TgCkUg2
| Gene ID (v4.3)* | Novel SNPs in TgCkUg2 | SNPs between the three lineages† | ||||
| Number | Synonymous | Non-synonymous | Synonymous | Non-synonymous | Protein description | |
| 641.m01562 | IV | 1 | 1 | 12 | 86 | SRS16B |
| 641.m02553 | IV | 1 | 1 | 6 | 1 | WD-40 repeat protein, putative |
| 49.m03276 | VI | 1 | 1 | 0 | 4 | ROP29 |
| 49.m03279 | VI | 2 | 8 | 1 | 13 | Hypothetical |
| 49.m03372 | VI | 1 | 1 | 13 | 3 | Long chain fatty acid CoA ligase |
| 55.m04829 | VIIb | 1 | 3 | 1 | 2 | SRS26A |
| 44.m02583 | VIII | 0 | 2 | 9 | 11 | Hypothetical |
| 44.m05903 | VIII | 0 | 2 | 7 | 8 | Hypothetical |
| 57.m01765 | IX | 0 | 2 | 143 | 231 | Protein kinase domain containing |
| 2.m00067 | IX | 3 | 7 | 0 | 0 | Hypothetical |
| 57.m01732 | IX | 0 | 2 | 7 | 8 | Hypothetical |
| 80.m02252 | IX | 1 | 1 | 4 | 2 | Phosphoenolpyruvate carboxykinase, putative |
| 42.m07434 | X | 0 | 2 | 0 | 0 | Hypothetical |
| 551.m00238 | XII | 3 | 6 | 8 | 44 | ROP5 |
| 65.m00001 | XII | 4 | 0 | 9 | 6 | NTPase I |
*Since the comparison was made against the annotation of Me49 in v4.3 of ToxoDB, these gene IDs are used throughout. These remain searchable in the current annotation (v 5.0). †Data from ToxoDB showing the total number of SNPs between GT1, Me49 and VEG, in order to put the number of novel SNPs into context.