Table 4.
Genes under selection identified by dN/dS analysis in TgCkUg2
| Chromosome (type*) | Comparator | Gene ID (v4.3) | Protein description | dN/dS ratio† | P-value |
| Ia (III) | Me49 (II) | 83.m02145 | Rhoptry kinase ROP4/ROP7 | Infinity | 0.025 <P < 0.050 |
| IV (II) | VEG (III) | 641.m01516 | Hypothetical | Infinity | 0.005 <P < 0.010 |
| V (III) | Me49 (II) | 39.m00623 | Proline-rich protein | Infinity | 0.010 <P < 0.025 |
| V (III) | Me49 (II) | 31.m01816 | Iron-sulfur cluster assembly accessory protein, putative | Infinity | 0.010 <P < 0.025 |
| V (III) | Me49 (II) | 76.m01544 | Hypothetical | Infinity | 0.010 <P < 0.025 |
| VI (II) | VEG (III) | 49.m03376 | Hypothetical | Infinity | 0.025 <P < 0.050 |
| VI (II) | VEG (III) | 49.m03382 | Hypothetical | Infinity | 0.010 <P < 0.025 |
| VI (II) | VEG (III) | 49.m03431 | Hypothetical | Infinity | 0.010 <P < 0.025 |
| VIII (III) | Me49 (II) | 59.m07776 | Hypothetical | Infinity | 0.025 <P < 0.050 |
| VIII (III) | Me49 (II) | 59.m03361 | Transporter, major facilitator family domain containing | 4.325 | 0.010 <P < 0.025 |
| X (II) | Me49 (II) | 42.m07434 | Hypothetical | Infinity | 0.010 <P < 0.025 |
| X (II) | VEG (III) | 42.m03570 | LytB domain-containing protein | Infinity | 0.025 <P < 0.050 |
| X (II) | VEG (III) | 42.m00013 | GRA3 | Infinity | 0.010 <P < 0.025 |
| X (II) | VEG (III) | 46.m02909 | Hypothetical | Infinity | 0.025 <P < 0.050 |
| XII (III) | Me49 (II) | 551.m00237 | Hypothetical | Infinity | 0.025 <P < 0.050 |
| XII (III) | Me49 (II) | 145.m00337 | Hypothetical | 6.527 | 0.010 <P < 0.025 |
*The chromosomal background genotype. †The number of non-synonymous SNPs divided by the number of synonymous SNPs. In most cases, no synonymous SNPs were found, and this rate approaches infinity.