Table 8.

Indication of intrachromosomal recombination in TgCkUg2

Locus position	VIII-19 0.9 Mb							VIII-20 2.1 Mb				VIII-21 5.8 Mb
Me49 (II)	A	T	G	C	T	T	T	C	T	G	A	G	C	G
TgCkUg5	*	*	*	*	*	*	*	*	*	*	*	*	*	*
TgCkUg8	*	*	*	*	A	C	*	T	*	A	*	*	*	*
TgCkUg2	*	*	*	*	A	C	*	T	*	A	*	A	A	T
TgCkUg6	T	*	C	G	*	*	C	*	C	*	T	A	A	T
VEG (III)	T	C	C	G	*	*	C	*	C	*	T	A	A	T

For loci VIII-19 and VIII-20 located around 0.9 and 2.1 Mb on chromosome VIII, TgCkUg2 is type II-like and shares some local allelic variants with TgCkUg8. Later on the chromosome, TgCkUg2 is type III-like, as shown by the VIII-21 locus and the major SNP type (Figure 1; Additional data file 1).