Table 1.
Evaluation of the different parameter combinations for ProSOM
| 4 × 4 | 5 × 5 | 6 × 6 | 7 × 7 | |
|---|---|---|---|---|
| 1 | 0.44 | 0.40 | 0.36 | 0.32 |
| 2 | 0.46 | 0.47 | 0.45 | 0.41 |
| 3 | 0.37 | 0.46 | 0.48 | 0.45 |
| 4 | 0.10 | 0.36 | 0.44 | 0.47 |
| 5 | 0.09 | 0.29 | 0.39 | 0.46 |
The columns denote the different grid sizes, the rows contain the different thresholds. The first line contains the results when using the threshold of the cluster with the highest promoter probability. The second line contains results when using the promoter probability of the cluster with second highest promoter probability as threshold, and so on. The values in the table are the F-measure calculated from the entire human genome when validating against the CAGE dataset. The maximum allowed distance is 500 bp. Bold value indicates highest value.