Table 1.
Summary of predicted STAT5 binding sites
| Type | Predictions
|
Testedc | Verifiedc | |
|---|---|---|---|---|
| All sitesa | Sites found in all four speciesb | |||
| IGF-I | ||||
| Paired 2 consensus | 2 | 2 | 2 | 2 |
| Paired 1 consensus | 32 | 12 | 10 | 5 |
| Paired 0 consensus | 207 | 25 | 11 | 1 |
| Single consensus | 18 | 4 | 3 | 2 |
| Single nonconsensus | 115 | 16 | 0 | 0 |
| Total | 374 | 59 | 26 | 10 |
| SOCS2 | ||||
| Paired 2 consensus | 2 | 1 | 2 | 2 |
| Paired 1 consensus | 11 | 1 | 1 | 1 |
| Paired 0 consensus | 135 | 13 | 8 | 0 |
| Single consensus | 12 | 2 | 3 | 1 |
| Single nonconsensus | 80 | 3 | 2 | 0 |
| Total | 240 | 20 | 16 | 4 |
| HNF6 | ||||
| Paired 2 consensus | 1 | 0 | 1 | 0 |
| Paired 1 consensus | 17 | 3 | 4 | 1 |
| Paired 0 consensus | 163 | 16 | 16 | 2 |
| Single consensus | 9 | 1 | 1 | 0 |
| Single nonconsensus | 91 | 9 | 0 | 0 |
| Total | 281 | 29 | 22 | 3 |
For experimental validation, preference was given to the sites conserved in all four species (rat, mouse, human, and dog). Adjacent sites located in the proximity of amplicons for other sites were in many cases not considered if not found in all four species.
STAT5 sites predicted for the rat genes based on a set of nine TFBS matrices (see supplemental Table S1).
Predicted rat STAT5 sites that are also present in mouse, human, and dog.
Testing and verification is based on results for 57 amplicons (64 sites) presented in Fig. 1 and data in Fig. 4.