Skip to main content
. 2009 Aug 11;4(8):e6604. doi: 10.1371/journal.pone.0006604

Table 2. Description of the reaction species, reactions and equations of the ODE model.

Reaction species
L Ligand Gclus Trimeric G-protein in the raft region
R G-protein coupled receptor (βγ)clus βγ-subunit of G-protein in the raft region
LR Ligand/receptor complex RK GPCR kinase
LRscat Ligand/receptor complex in the non-raft region LR-P Phosphorylated ligand-bound receptor
LRclus Ligand/receptor complex in the raft region R-P Phosphorylated receptor
Gscat Trimeric G-protein in the non-raft region LRi Internalized ligand-bound receptor
α-GTP GTP-bound (active) α-subunit of G-protein α-GDP GDP-bound α-subunit of G-protein
(βγ)scat βγ-subunit of G-protein in the non-raft region
ODE model reactions and flux expressions
1 L+R ↔ LR 7 [LRscat]∶Gscat → α−GTP+βγscat
Inline graphic Inline graphic
2 βγscat+RK ↔ βγ−RKscat 8 [LRclus]∶Gclus → α−GTP+βγclus
Inline graphic Inline graphic
3 βγclus+RK ↔ βγ−RKclus 9 α−GTP → α-GDP
Inline graphic Inline graphic
4 [βγ−RKscat]∶LRscat → LR−Pscat 10 α−GDP+βγscat → Gscat
Inline graphic Inline graphic
5 [βγ−RKclus]∶LRclus → LR−Pclus 11 α−GDP+βγclus → Gclus
Inline graphic Inline graphic
6 L+R−P ↔ LR−P 12 LR−P → LRi
Inline graphic Inline graphic
ODE model equations
Inline graphic Inline graphic Inline graphic
Inline graphic Inline graphic Inline graphic
Inline graphic Inline graphic Inline graphic
Inline graphic Inline graphic Inline graphic
Inline graphic Inline graphic Inline graphic
Inline graphic Inline graphic