Table 1.
Datasets analyzed in this paper
| Dataset | Genomic compartment
|
No. of
sites, bp
|
No. of taxa | |||||
|---|---|---|---|---|---|---|---|---|
| Total
|
Shared
variable
|
|||||||
| pt | nuc | mt | Raw | nr | Raw | nr | ||
| Six genes | rbcL/atpB | 18S | matR/coxI/atpA | 8,911 | 8,087 | 1,374 | 878 | 35 |
| Mathews and Donoghue (11) | — | PHYA/PHYC | — | 1,104 | 634 | 26 | ||
| Qiu et al. (12) | rbcL/atpB | 18S | matR/atpA | 8,733 | 2,330 | 105 | ||
| Parkinson et al. (14) | rbcL | 18S | coxI/19S/rps2 | 6,562 | 1,185 | 51 | ||
| Nine genes | rbcL/atpB | 18S/PHYC | matR/coxI/atpA/19S/rps2 | 12,112 | 12,010 | 1,316 | 931 | 15 |
Specific genes, genomic compartment, number of total and shared variable sites given in bp for both raw and noise-reduced (nr) data, and number of taxa are listed for each dataset.